# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dbsA	90	0.5223		
1wmiA	90	6.314	d.298.1.2	121045
1kllA	130	9.446	d.32.1.2	72720
2qalM	117	10.62		
1ajsA	412	12.24	c.67.1.1	34276
1mwwA	128	13.01	d.80.1.4	91483
2j6fA	62	13.33		
1v9vA	114	14.03	a.29.10.1	119898
1yizA	429	14.54	c.67.1.1	123375
2o88A	58	18.16		
2r6hA	290	18.46		
1rgeA	96	19.14	d.1.1.2	36028
1rdsA	105	22.03	d.1.1.4	36236
1nvpD	108	25.65	a.32.1.1,b.56.1.1	92213,92214
2v8qA	157	31.95		
1i0vA	104	32.41	d.1.1.4	36054
1uj0A	62	38.39	b.34.2.1	99449
2v8hA	474	39.55		
1ly7A	121	40.33	d.82.2.1	74339
2e29A	92	40.50		
1azeA	56	41.22	b.34.2.1	24536
1fmbA	104	41.53	b.50.1.1	26777
1npoC	95	42.55	b.9.1.1	23271
1ecxA	384	42.77	c.67.1.3	34431
1l5cA	92	43.65	b.9.1.1	73577
1akhB	83	43.87	a.4.1.1	15985
1fusA	106	44.67	d.1.1.4	36050
1ariA	396	44.90	c.67.1.1	34331
2esnA	310	45.13	a.4.5.37,c.94.1.1	132333,132334
1zlmA	58	45.19		
1zbqA	327	45.38	c.2.1.2	124862
1aiaA	396	46.96	c.67.1.1	34306
2a28A	54	47.22		
1iqvA	218	47.34	a.75.1.1	62661
1i8vA	96	49.12	d.1.1.2	61985
1bbzA	58	49.52	b.34.2.1	24477
2z20A	432	50.57		
1j8bA	112	52.02	d.222.1.1	77101
2ookA	127	52.12		
1pylA	97	53.53	d.1.1.2	104391
1gmpA	96	54.23	d.1.1.2	36036
2ak5A	64	56.59		
1i1gA	141	57.15	a.4.5.32,d.58.4.2	65982,65983
1nwbA	124	57.57	b.124.1.1	86296
1ekgA	127	57.89	d.82.2.1	40021
2dlaA	222	58.05		
1xl3C	92	60.39	a.243.1.1	122104
1b9oA	123	61.26	d.2.1.2	36597
1konA	249	61.50	e.39.1.1	72823
1semA	58	61.79	b.34.2.1	24544
1c1yB	77	62.21	d.15.1.5	37618
2rjnA	154	62.77		
2fj8A	125	66.61	g.3.13.1	133554
2bn2A	95	67.00	b.9.1.1	23266
1zuuA	58	67.43	b.34.2.1	125688
1jchA	551	68.41	b.101.1.1,b.110.1.1,h.4.9.1	66491,66492,66493
1w70A	60	68.58		
2opaA	61	68.65		
1s9uA	207	68.85	a.184.1.1	105390
2d9iA	96	68.97		
2bz8A	58	69.21		
1kjsA	74	70.38	a.50.1.1	17792
1gcqA	61	73.59	b.34.2.1	60434
1ahxA	396	77.25	c.67.1.1	34293
2bzyA	67	77.61		
1xexB	172	77.94		
2f60K	64	80.49		
2eqgA	49	80.62		
2oewA	380	83.22		
1tejA	64	83.31	g.20.1.1	106815
1utiA	58	84.02	b.34.2.1	99962
1lniA	96	84.97	d.1.1.2	74046
3ckkA	235	85.04		
2efkA	301	85.71		
2d1xA	66	86.68		
1fkqA	124	88.98	d.2.1.2	36601
2afrA	231	89.08		
1ars	396	89.09