# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rdsA	105	10.95	d.1.1.4	36236
2rjnA	154	11.32		
1mw7A	240	18.73	e.39.1.1	79557
2b78A	385	21.48	b.122.1.9,c.66.1.51	128025,128026
2dbsA	90	21.69		
1ajsA	412	22.11	c.67.1.1	34276
2as0A	396	25.05	b.122.1.9,c.66.1.51	127227,127228
1konA	249	26.22	e.39.1.1	72823
1jx2B	315	27.98	c.37.1.8	67404
2qalM	117	28.06		
2g5cA	281	29.49	a.100.1.12,c.2.1.6	134646,134647
2v8hA	474	29.67		
1i0vA	104	30.28	d.1.1.4	36054
2aalA	131	30.54	d.80.1.6	126483
1mwwA	128	31.90	d.80.1.4	91483
2esnA	310	39.10	a.4.5.37,c.94.1.1	132333,132334
1xl3C	92	39.56	a.243.1.1	122104
1rtuA	114	42.01	d.1.1.4	36139
1umpA	631	42.47	a.102.4.2,a.102.4.2	99619,99620
1v9vA	114	46.23	a.29.10.1	119898
1ir6A	424	52.73	c.107.1.2	71342
1fusA	106	54.44	d.1.1.4	36050
2fha	183	60.44		
1yizA	429	61.58	c.67.1.1	123375
2eqgA	49	62.21		
2fvvA	194	63.56	d.113.1.1	134226
1fkqA	124	68.55	d.2.1.2	36601
2fujA	137	69.77	d.38.1.1	134175
3cjdA	198	72.73		
1wjgA	137	75.00	c.26.2.4	114696
1kmkA	406	76.90	c.67.1.3	68696
1qsdA	106	81.18	a.7.5.1	16335
1j8bA	112	83.05	d.222.1.1	77101
2igtA	332	83.38	c.66.1.51	137401
1lfpA	249	84.48	e.39.1.1	73885
1b9oA	123	86.77	d.2.1.2	36597
1vpmA	169	87.69	d.38.1.1	113967
2aliA	158	87.98	d.38.1.1	126976