# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2dlaA 222 1.007 1xm0A 147 1.244 b.88.1.3 122140 1twyA 290 2.272 c.94.1.1 112767 2vlqB 134 3.247 1gmpA 96 7.447 d.1.1.2 36036 1lniA 96 8.137 d.1.1.2 74046 1s4cA 155 10.89 b.82.2.7 118860 1rgeA 96 12.82 d.1.1.2 36028 1l1dA 152 12.85 b.88.1.3 73452 1rtuA 114 13.00 d.1.1.4 36139 1fr2B 134 13.58 d.4.1.1 83257 2gykB 134 14.28 d.4.1.1 135857 1i8vA 96 15.62 d.1.1.2 61985 1emvB 134 17.84 d.4.1.1 37135 2e9xC 219 18.72 2q4hA 351 20.33 d.13.1.2,d.13.1.2 139853,139854 1pylA 97 21.17 d.1.1.2 104391 1v65A 64 23.75 a.212.1.1 108393 1e5pA 151 25.48 b.60.1.1 59272 1eia 207 27.60 2a6hA 315 32.85 d.74.3.1,d.181.1.1 126260,126261 1mgrA 99 33.75 d.1.1.2 79106 2nppB 449 33.88 a.118.1.20 138445 1r6rA 100 34.74 a.190.1.1 97158 2a7lA 136 38.37 d.20.1.1 126350 3b7nA 320 39.55 1ie9A 259 40.11 a.123.1.1 62318 3cb2A 475 40.13 1qy1A 174 40.31 b.60.1.1 96568 1wwuA 99 43.79 1tcaA 317 44.10 c.69.1.17 34726 1nubA 229 45.34 a.39.1.3,g.3.11.3,g.68.1.1 17191,44330,44715 1jksA 294 45.44 d.144.1.7 71710 2jdxA 385 46.09 d.126.1.2 41139 1gm6A 175 46.71 b.60.1.1 70272 1hxpA 348 47.36 d.13.1.2,d.13.1.2 37530,37531 1b4fA 82 48.13 a.60.1.2 17934 1afvA 151 48.22 a.73.1.1 18324 1i06A 180 48.94 b.60.1.1 27131 1lm6A 215 49.54 d.167.1.1 84628 1guqA 348 51.16 d.13.1.2,d.13.1.2 37522,37523 1twfC 318 52.87 d.74.3.1,d.181.1.1 112727,112728 1a3yA 149 54.37 b.60.1.1 27110 1ak4C 145 58.08 a.73.1.1 18321 2engA 210 59.59 b.52.1.1 26895 2pqqA 149 60.82 2eq7C 40 61.86 1rtu 114 61.99 1pp7U 131 62.19 a.4.5.44 94973 1lb2B 84 62.35 a.60.3.1 77871 2ra6A 166 62.93 1pdnC 128 62.93 a.4.1.5 16047 2fz0A 149 64.04 1h75A 81 64.10 c.47.1.1 60716 2hlvA 160 64.95 2aieP 203 65.72 2e9xA 149 66.87 1x8dA 104 67.05 2c61A 469 68.00 2q82A 129 68.36 2a6tA 271 68.44 a.242.1.1,d.113.1.7 126309,126310 1jv4A 162 69.15 b.60.1.1 67343 2pa8D 265 69.31 3c10A 423 71.32 2hraA 209 71.43 1tca 317 71.79 1g1eB 89 71.83 a.59.1.1 17931 3bs2A 148 72.67 1kpfA 125 72.84 d.13.1.1 37507 2opwA 291 75.92 2h9bA 312 78.30 1umwA 237 81.14 d.223.1.2,d.223.1.2 99631,99632 1yptA 305 81.64 c.45.1.2 32686 1zboA 210 81.79 b.122.1.10 124859 1dzkA 157 82.17 b.60.1.1 27096 1mx0A 472 83.05 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2gz1A 366 83.67 c.2.1.3,d.81.1.1 135887,135888 2eng 210 85.27