# TARGET T0484 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0484.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.0267 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.086 0.031 0.009 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.081 0.017 0.077 0.684 2 R 0.037 0.019 0.005 0.001 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.008 0.117 0.736 3 D 0.027 0.021 0.004 0.001 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.057 0.007 0.061 0.807 4 M 0.116 0.066 0.006 0.001 0.002 0.003 0.003 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.244 0.013 0.097 0.437 5 T 0.065 0.090 0.004 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.097 0.011 0.242 0.475 6 E 0.109 0.066 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.025 0.092 0.583 7 E 0.100 0.116 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.014 0.241 0.460 8 T 0.105 0.105 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.025 0.177 0.516 9 R 0.108 0.249 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.087 0.014 0.044 0.473 10 K 0.117 0.168 0.019 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.081 0.018 0.087 0.496 11 D 0.237 0.083 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.034 0.074 0.507 12 L 0.348 0.140 0.043 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.077 0.018 0.050 0.315 13 P 0.004 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.019 0.964 14 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.996 15 E 0.014 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.352 0.619 16 A 0.131 0.041 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.521 0.303 17 L 0.100 0.712 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.031 0.149 18 R 0.030 0.801 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.011 0.151 19 A 0.023 0.901 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.003 0.068 20 L 0.018 0.909 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.006 0.056 21 A 0.012 0.945 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.005 0.029 22 E 0.014 0.929 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.045 23 A 0.019 0.932 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.004 0.038 24 E 0.018 0.919 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.009 0.045 25 E 0.012 0.920 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.012 0.043 26 R 0.015 0.935 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.036 27 R 0.012 0.955 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.026 28 R 0.010 0.963 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.019 29 R 0.011 0.943 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.003 0.034 30 A 0.021 0.936 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.003 0.031 31 K 0.052 0.881 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.011 0.006 0.045 32 A 0.123 0.762 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.027 0.006 0.063 33 L 0.147 0.647 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.048 0.010 0.116 34 D 0.181 0.239 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.093 0.020 0.399 35 L 0.185 0.093 0.113 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.036 0.109 0.384 36 P 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.003 0.988 37 K 0.017 0.011 0.008 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.220 0.004 0.133 0.588 38 E 0.097 0.022 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.125 0.006 0.108 0.626 39 I 0.225 0.049 0.003 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.002 0.002 0.004 0.007 0.004 0.003 0.181 0.014 0.036 0.463 40 G 0.170 0.042 0.004 0.001 0.001 0.001 0.001 0.002 0.002 0.003 0.002 0.002 0.003 0.007 0.005 0.003 0.197 0.022 0.072 0.460 41 G 0.087 0.011 0.012 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.003 0.004 0.003 0.007 0.004 0.003 0.075 0.009 0.144 0.623 42 R 0.015 0.008 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.151 0.005 0.030 0.778 43 N 0.055 0.006 0.005 0.001 0.002 0.002 0.002 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.100 0.019 0.112 0.684 44 G 0.070 0.003 0.004 0.001 0.003 0.001 0.002 0.001 0.003 0.001 0.001 0.002 0.001 0.001 0.002 0.002 0.093 0.005 0.093 0.711 45 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.004 0.989 46 E 0.055 0.002 0.001 0.001 0.018 0.010 0.007 0.011 0.001 0.001 0.007 0.002 0.004 0.005 0.005 0.005 0.198 0.007 0.159 0.501 47 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.996 48 V 0.009 0.003 0.001 0.001 0.015 0.005 0.005 0.007 0.004 0.008 0.002 0.001 0.005 0.003 0.007 0.004 0.535 0.002 0.042 0.341 49 R 0.039 0.002 0.001 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.093 0.002 0.088 0.762 50 F 0.046 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.001 0.001 0.002 0.004 0.007 0.006 0.276 0.004 0.095 0.535 51 G 0.103 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.462 0.027 0.102 0.281 52 D 0.073 0.011 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.020 0.002 0.005 0.003 0.002 0.003 0.081 0.008 0.399 0.380 53 W 0.017 0.009 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.310 0.004 0.064 0.580 54 E 0.011 0.034 0.001 0.001 0.001 0.006 0.001 0.001 0.004 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.079 0.003 0.630 0.218 55 K 0.231 0.064 0.002 0.001 0.003 0.001 0.002 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.085 0.075 0.320 0.199 56 K 0.244 0.395 0.007 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.038 0.063 0.175 57 G 0.233 0.056 0.024 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.171 0.122 0.097 0.286 58 I 0.119 0.021 0.149 0.004 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.138 0.012 0.238 0.307 59 A 0.015 0.012 0.010 0.008 0.005 0.002 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.003 0.461 0.005 0.056 0.399 60 I 0.008 0.017 0.003 0.003 0.012 0.011 0.033 0.007 0.001 0.001 0.001 0.001 0.004 0.004 0.005 0.003 0.433 0.004 0.084 0.363 61 D 0.021 0.017 0.002 0.001 0.002 0.002 0.013 0.004 0.007 0.005 0.009 0.002 0.005 0.005 0.007 0.006 0.303 0.008 0.092 0.491 62 F 0.039 0.014 0.003 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.003 0.001 0.002 0.002 0.001 0.002 0.408 0.005 0.107 0.402