# List of top-scoring protein chains for T0484.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bjsA 325 0.1825 b.82.2.1 128632 1odmA 331 0.1833 b.82.2.1 86875 2c9tA 217 15.81 2bypA 214 16.90 3c84A 227 17.37 2pgzA 230 17.48 2a36A 59 19.93 1iakB 185 22.32 b.1.1.2,d.19.1.1 21626,38200 1d9kD 188 22.71 b.1.1.2,d.19.1.1 21628,38202 1ns5A 155 23.73 c.116.1.3 80705 1mujB 197 25.15 b.1.1.2,d.19.1.1 79490,79491 2pxyD 189 25.71 1k2dB 189 25.71 b.1.1.2,d.19.1.1 84293,84294 2a28A 54 25.72 1jk8B 190 26.70 b.1.1.2,d.19.1.1 63147,63148 1kb3A 496 27.23 b.71.1.1,c.1.8.1 72269,72270 1a6bB 40 27.47 g.40.1.1 45172 1kgxA 496 27.64 b.71.1.1,c.1.8.1 68602,68603 1kbkA 496 27.99 b.71.1.1,c.1.8.1 72282,72283 1kguA 496 28.03 b.71.1.1,c.1.8.1 68598,68599 3baxA 496 28.10 2cpuA 496 28.14 b.71.1.1,c.1.8.1 63334,63335 1hnyA 496 28.14 b.71.1.1,c.1.8.1 27769,28756 1kgwA 496 28.14 b.71.1.1,c.1.8.1 68600,68601 1f3jB 187 29.87 b.1.1.2,d.19.1.1 21646,38220 1jxjA 496 30.47 b.71.1.1,c.1.8.1 63314,63315 2a37A 59 30.93 2p24B 259 31.06 1es0B 221 32.11 b.1.1.2,d.19.1.1 21644,38218 1nm9A 496 32.19 b.71.1.1,c.1.8.1 91974,91975 1kbbA 496 32.60 b.71.1.1,c.1.8.1 72275,72276 1smdA 496 32.72 b.71.1.1,c.1.8.1 27768,28755 1z32X 496 33.00 b.71.1.1,c.1.8.1 124394,124395 1jxkA 491 33.01 b.71.1.1,c.1.8.1 63316,63317 2iadB 205 33.13 b.1.1.2,d.19.1.1 21640,38214 1iaoB 222 33.21 b.1.1.2,d.19.1.1 21642,38216 1lnuB 217 33.73 b.1.1.2,d.19.1.1 74099,74100 2nnaB 207 34.54 1pr9A 244 36.67 c.2.1.2 95060 2dlmA 68 36.69 1s9vB 198 36.98 b.1.1.2,d.19.1.1 98762,98763 2fseB 187 38.01 b.1.1.2,d.19.1.1 134019,134020 1u6pA 56 38.98 g.40.1.1 113073 1nj8A 459 39.13 c.51.1.1,d.68.5.1,d.104.1.1 85769,85770,85771 2dkfA 431 42.38 2yvdA 431 42.43 2pmaA 146 42.50 2nwmA 65 42.65 2eweA 353 42.90 1o88A 353 43.39 b.80.1.1 81178 1uhcA 79 43.81 b.34.2.1 99397 1ag4A 103 44.20 b.11.1.1 23629 1hdfA 102 44.56 b.11.1.1 23627 1ootA 60 47.07 b.34.2.1 93386 2f2bA 246 47.33 2iecA 131 49.23 d.316.1.1 137300 1uvqB 198 51.82 b.1.1.2,d.19.1.1 100064,100065 1qltA 560 53.46 d.58.32.1,d.145.1.1 39457,41720 2i99A 312 53.93 1titA 98 54.96 b.1.1.4 21716 1yvvA 336 57.09 2cwdA 161 58.76 1waaF 93 61.92 1waaA 93 62.19 2nudC 35 62.22 1waaE 93 66.41 2da9A 70 66.93 2dm1A 73 67.57 1zuuA 58 68.36 b.34.2.1 125688 2yuoA 78 70.10 1udlA 98 73.46 b.34.2.1 99212 1r5vB 185 76.55 b.1.1.2,d.19.1.1 97118,97119 2drmA 58 78.38 1p7bA 333 80.94 b.1.18.16,f.14.1.1 87844,87845 1ktdB 215 81.05 b.1.1.2,d.19.1.1 72966,72967 1fngB 224 82.52 b.1.1.2,d.19.1.1 59906,59907 1ieaB 228 82.60 b.1.1.2,d.19.1.1 21632,38206 1fneB 224 83.53 b.1.1.2,d.19.1.1 59898,59899 2drkA 59 84.01 1azeA 56 84.71 b.34.2.1 24536 1agiA 125 84.86 d.5.1.1 37303 1uueA 62 85.03 b.34.2.1 100005 1kt2B 213 86.26 b.1.1.2,d.19.1.1 72953,72954 1iebB 227 89.70 b.1.1.2,d.19.1.1 21636,38210