# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hdfA	102	7.704	b.11.1.1	23627
1vr8A	142	8.330	d.312.1.1	120445
2gt1A	326	10.78		
2fl4A	149	11.87	d.108.1.1	133706
2nudC	35	12.01		
1ouoA	210	13.22	d.4.1.6	93554
1wxxA	382	13.72	b.122.1.9,c.66.1.51	121418,121419
1mwpA	96	15.80	d.170.2.1	42453
1g5cA	170	17.45	c.53.2.1	60264
2as0A	396	17.56	b.122.1.9,c.66.1.51	127227,127228
1rdsA	105	17.89	d.1.1.4	36236
3cjsA	60	18.90		
1mveA	243	18.95	b.29.1.2	85140
1jk4A	89	19.84	b.9.1.1	77130
1vi3A	170	21.85	b.17.1.2	100730
2eisA	133	22.37		
1sv6A	269	22.58	d.177.1.1	106043
2a6sA	84	22.59	d.298.1.1	126305
1fusA	106	22.66	d.1.1.4	36050
1ylkA	172	24.97		
2vlqB	134	26.51		
2g7eA	211	27.62		
1zkiA	133	28.14	d.38.1.5	125199
3bgeA	201	28.28		
1zy9A	564	29.05	b.30.5.11,c.1.8.13	125813,125814
2gvhA	288	31.06	d.38.1.1,d.38.1.1	135776,135777
1at0	145	32.56		
2eb4A	267	35.58		
1dvoA	152	36.54	a.136.1.1	19623
2ayhA	214	40.47	b.29.1.2	24172
2essA	248	41.12	d.38.1.8,d.38.1.8	132346,132347
1uasA	362	41.80	b.71.1.1,c.1.8.1	88388,88389
1pm4A	119	46.85	b.135.1.1	94891
2egjA	128	48.11		
1zmiA	29	48.36		
2hnuA	81	48.42		
1mzbA	136	50.09	a.4.5.42	91497
1gbgA	214	55.54	b.29.1.2	24171
1at0A	145	62.14	b.86.1.1	28374
2ownA	262	63.65		
2hwvA	121	65.27		
2hfnA	153	65.94		
2iepA	192	66.96		
1yliA	153	67.83	d.38.1.1	123651
1q4uA	151	68.30	d.38.1.5	95828
2bynA	227	69.13		
1z54A	132	69.41	d.38.1.1	124450
1jqnA	883	70.24	c.1.12.3	77159
1cd0A	111	71.24	b.1.1.1	20559
1aqzA	149	72.22	d.1.1.3	36238
2fe3A	145	73.63		
3ba3A	145	74.31		
2hljA	157	76.50	d.38.1.1	136570
1e8pA	46	76.79	g.55.1.1	59385
2o55A	258	78.20		
1vpmA	169	79.10	d.38.1.1	113967
1vmoA	163	79.48	b.77.1.1	27974
2jssB	62	80.77		
2fywA	267	81.16	c.135.1.1	134408
3bjkA	153	82.98		
2hlkA	255	84.03		
3cvjA	243	85.31		
1x0pA	143	86.62	d.58.10.2	121552
2f41A	121	86.80	d.38.1.5	132904
1cnvA	299	87.10	c.1.8.5	28989
1mvfD	82	87.30	b.129.1.1	85143
1anfA	370	87.81	c.94.1.1	35776
1wluA	136	88.20	d.38.1.5	121015
2d49A	53	88.34		
1j1yA	136	89.24	d.38.1.5	90776