# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nudC 35 4.104 1vr8A 142 5.155 d.312.1.1 120445 1hdfA 102 6.408 b.11.1.1 23627 3bgeA 201 6.847 1mveA 243 7.192 b.29.1.2 85140 1ouoA 210 10.40 d.4.1.6 93554 1wxxA 382 10.74 b.122.1.9,c.66.1.51 121418,121419 2as0A 396 11.22 b.122.1.9,c.66.1.51 127227,127228 1fusA 106 11.34 d.1.1.4 36050 1at0 145 11.38 1rdsA 105 11.83 d.1.1.4 36236 2gt1A 326 12.76 1vi3A 170 13.06 b.17.1.2 100730 2rauA 354 14.09 1jqnA 883 14.41 c.1.12.3 77159 3cjsA 60 15.64 1sv6A 269 16.05 d.177.1.1 106043 2a6sA 84 17.41 d.298.1.1 126305 1g5cA 170 18.52 c.53.2.1 60264 2fl4A 149 18.69 d.108.1.1 133706 1ylkA 172 18.71 1at0A 145 20.29 b.86.1.1 28374 2g7eA 211 20.39 1mwpA 96 20.79 d.170.2.1 42453 1jk4A 89 22.87 b.9.1.1 77130 2o55A 258 23.00 2eb4A 267 23.82 2vpzA 765 26.57 1dvoA 152 28.10 a.136.1.1 19623 2pm1A 30 31.47 2ayhA 214 31.99 b.29.1.2 24172 1aqzA 149 32.26 d.1.1.3 36238 2vlqB 134 32.31 2d49A 53 35.24 2fueA 262 36.52 c.108.1.10 134119 1pgsA 314 37.03 b.121.1.1,b.121.1.1 23653,23654 1s3aA 102 38.43 c.47.1.22 118847 2cjlA 204 38.89 1gp1A 198 40.12 c.47.1.10 33059 2jssB 62 40.41 2eisA 133 45.65 3cvjA 243 46.67 2gvhA 288 46.84 d.38.1.1,d.38.1.1 135776,135777 1k8tA 510 47.82 e.41.1.1 68316 2hfnA 153 48.63 1mzbA 136 49.38 a.4.5.42 91497 2hnuA 81 50.42 1zy9A 564 50.47 b.30.5.11,c.1.8.13 125813,125814 2uy2A 294 50.66 1x0pA 143 51.30 d.58.10.2 121552 3c7bA 417 51.58 1k55A 246 52.56 e.3.1.1 68156 1zkiA 133 52.64 d.38.1.5 125199 1sx5A 244 52.66 c.52.1.2 99023 2id4A 503 53.96 b.18.1.20,c.41.1.1 137265,137266 1vmoA 163 54.15 b.77.1.1 27974 1gbgA 214 54.97 b.29.1.2 24171 1yliA 153 55.87 d.38.1.1 123651 2hljA 157 56.41 d.38.1.1 136570 2ownA 262 57.01 1q4uA 151 57.26 d.38.1.5 95828 1n0zA 45 58.12 g.41.11.1 85247 1zmiA 29 59.19 2oauA 306 59.60 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1ta3A 274 59.62 c.1.8.5 106731 2id1A 130 61.01 2p9wA 334 64.96 1dypA 271 65.52 b.29.1.2 24185 3c66C 26 65.87 1cd0A 111 68.79 b.1.1.1 20559 3b7kA 333 69.14 2egjA 128 69.82 1vpmA 169 71.43 d.38.1.1 113967 1cnvA 299 71.46 c.1.8.5 28989 3ch3X 265 72.97 2bdeA 470 76.54 c.108.1.23 128335 2dx0A 138 79.00 1uasA 362 80.44 b.71.1.1,c.1.8.1 88388,88389 1i25A 37 81.85 g.3.6.2 44115 2g1lA 104 86.35 b.26.1.2 134520 1ej6B 1275 86.49 i.7.1.1 45968 1t17A 148 86.61 d.129.3.6 112215 2essA 248 86.98 d.38.1.8,d.38.1.8 132346,132347 1anfA 370 87.26 c.94.1.1 35776 1pm4A 119 87.33 b.135.1.1 94891 2ciuA 127 87.68 2hwvA 121 88.14 2bycA 137 89.35 d.58.10.2 129476