# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2as0A 396 0.5923 b.122.1.9,c.66.1.51 127227,127228 2fl4A 149 1.459 d.108.1.1 133706 1wxxA 382 1.803 b.122.1.9,c.66.1.51 121418,121419 1hdfA 102 2.524 b.11.1.1 23627 1ouoA 210 5.267 d.4.1.6 93554 1at0 145 6.193 3bgeA 201 7.474 2nudC 35 9.395 1vr8A 142 9.424 d.312.1.1 120445 2dx0A 138 9.438 2g7eA 211 9.566 2eisA 133 10.23 1at0A 145 11.17 b.86.1.1 28374 1jk4A 89 11.44 b.9.1.1 77130 3bjkA 153 13.50 1yliA 153 13.84 d.38.1.1 123651 2g1lA 104 13.92 b.26.1.2 134520 1aqzA 149 14.89 d.1.1.3 36238 1uasA 362 15.15 b.71.1.1,c.1.8.1 88388,88389 3cjsA 60 16.33 1sv6A 269 16.71 d.177.1.1 106043 1mwpA 96 17.52 d.170.2.1 42453 1jqnA 883 17.83 c.1.12.3 77159 2a6sA 84 18.38 d.298.1.1 126305 1wmiA 90 18.48 d.298.1.2 121045 3b7kA 333 18.66 1g5cA 170 18.89 c.53.2.1 60264 2pm1A 30 19.12 2p9wA 334 19.23 2eb4A 267 19.76 2egjA 128 20.33 2ayhA 214 20.99 b.29.1.2 24172 1sawA 225 22.02 d.177.1.1 112050 1fsuA 492 22.41 c.76.1.2 35032 1vpmA 169 24.07 d.38.1.1 113967 2vpzA 765 24.26 2gt1A 326 24.61 3blnA 143 26.82 2dfuA 264 27.23 1rdsA 105 27.81 d.1.1.4 36236 1dvoA 152 27.97 a.136.1.1 19623 1zkiA 133 31.57 d.38.1.5 125199 2f41A 121 32.96 d.38.1.5 132904 1nkqA 259 33.05 d.177.1.1 103862 2o55A 258 33.26 1ixlA 131 34.25 d.38.1.5 90717 2hnuA 81 35.21 2v1oA 151 35.74 1fusA 106 35.87 d.1.1.4 36050 1wluA 136 37.19 d.38.1.5 121015 1j1yA 136 37.51 d.38.1.5 90776 1gvkB 240 38.38 b.47.1.2 70610 1mveA 243 38.62 b.29.1.2 85140 1uxzA 131 39.79 b.18.1.10 100170 1vmoA 163 39.87 b.77.1.1 27974 2hljA 157 40.79 d.38.1.1 136570 2a08A 60 41.37 2q2bA 179 41.72 1hdhA 536 41.74 c.76.1.2 65805 1vi3A 170 41.85 b.17.1.2 100730 2uy2A 294 42.60 2hwvA 121 42.93 1ootA 60 43.32 b.34.2.1 93386 2i1aA 148 43.34 1wyxA 69 43.41 1zmiA 29 44.44 1q4uA 151 46.90 d.38.1.5 95828 2gvhA 288 46.95 d.38.1.1,d.38.1.1 135776,135777 2i6cA 160 48.51 d.108.1.1 137095 3cdxA 354 49.49 1lo7A 141 51.26 d.38.1.1 74144 1t8oA 245 52.76 b.47.1.2 119187 1njkA 156 53.28 d.38.1.1 85818 1z54A 132 55.00 d.38.1.1 124450 1ny4A 82 55.09 b.40.4.5 92316 3ck1A 150 55.47 1kcqA 104 57.11 d.109.1.1 68449 2fueA 262 57.16 c.108.1.10 134119 1gbgA 214 57.20 b.29.1.2 24171 1upiA 225 57.34 b.82.1.1 99757 1s5uA 138 58.30 d.38.1.1 98573 2jrfA 184 58.96 1pm4A 119 59.63 b.135.1.1 94891 1gheA 177 59.74 d.108.1.1 76222 1f9yA 158 61.81 d.58.30.1 83249 2gf6A 135 61.88 d.38.1.1 135077 2cyeA 133 61.99 d.38.1.1 131021 1e8pA 46 62.31 g.55.1.1 59385 2oiwA 136 63.17 1ylkA 172 63.76 2pzhA 135 68.69 1k2xB 143 69.43 1kfwA 435 70.07 c.1.8.5,d.26.3.1 77376,77377 1zy9A 564 70.81 b.30.5.11,c.1.8.13 125813,125814 1nxmA 197 73.43 b.82.1.1 86385 1w9sA 142 73.64 b.18.1.10 114416 1x0pA 143 74.56 d.58.10.2 121552 2bdeA 470 74.77 c.108.1.23 128335 1yphE 97 75.41 1t5hX 504 77.81 e.23.1.1 106449 1cd9B 215 77.97 b.1.2.1,b.1.2.1 22041,22042 2o5uA 148 78.31 1edg 380 78.74 2nujA 163 79.08 d.38.1.1 138608 1y13A 181 80.10 d.96.1.2 116319 1gd8A 118 80.57 d.188.1.1 60445 2hfnA 153 81.13 1cnvA 299 81.32 c.1.8.5 28989 2ov6A 101 82.11 1wijA 140 82.21 a.140.5.1 114674 1anfA 370 82.83 c.94.1.1 35776 1hd3A 62 82.96 b.34.2.1 65802 1ekjA 221 83.07 c.53.2.1 33364 1u06A 62 83.26 b.34.2.1 119404 1yzsA 121 83.69 3b5qA 482 84.63 2phcB 225 85.83 1wwjA 105 85.92 1pgsA 314 87.06 b.121.1.1,b.121.1.1 23653,23654 2vlqB 134 88.21 2ownA 262 89.31 1ta3A 274 89.79 c.1.8.5 106731 3citA 160 89.89