# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2as0A	396	6.687	b.122.1.9,c.66.1.51	127227,127228
2gt1A	326	8.862		
1hdfA	102	9.643	b.11.1.1	23627
1wxxA	382	10.78	b.122.1.9,c.66.1.51	121418,121419
2nudC	35	13.25		
2fl4A	149	16.73	d.108.1.1	133706
1vi3A	170	17.34	b.17.1.2	100730
3cjsA	60	19.15		
1jqnA	883	19.50	c.1.12.3	77159
1ouoA	210	19.74	d.4.1.6	93554
1fusA	106	20.23	d.1.1.4	36050
1mveA	243	20.42	b.29.1.2	85140
2ayhA	214	21.07	b.29.1.2	24172
1g5cA	170	21.48	c.53.2.1	60264
1rdsA	105	21.91	d.1.1.4	36236
2o55A	258	24.01		
1mwpA	96	24.50	d.170.2.1	42453
1vr8A	142	24.67	d.312.1.1	120445
2jssB	62	31.11		
2hlkA	255	32.62		
1ylkA	172	35.15		
2gvhA	288	36.95	d.38.1.1,d.38.1.1	135776,135777
1gbgA	214	37.24	b.29.1.2	24171
1zy9A	564	39.85	b.30.5.11,c.1.8.13	125813,125814
1dvoA	152	40.70	a.136.1.1	19623
2g7eA	211	41.61		
2a6sA	84	42.45	d.298.1.1	126305
3bgeA	201	42.76		
2eisA	133	43.99		
1at0	145	45.06		
1jk4A	89	46.56	b.9.1.1	77130
2vpzA	765	50.94		
1sv6A	269	53.81	d.177.1.1	106043
2dx0A	138	54.63		
2hfnA	153	55.83		
1zmiA	29	57.91		
1x0pA	143	60.04	d.58.10.2	121552
2ownA	262	60.68		
3ba3A	145	61.57		
2e4tA	519	62.78		
2bynA	227	66.09		
3bjkA	153	69.49		
2bycA	137	69.79	d.58.10.2	129476
2egjA	128	70.06		
2essA	248	72.34	d.38.1.8,d.38.1.8	132346,132347
1yliA	153	73.40	d.38.1.1	123651
1ni3A	392	76.83	c.37.1.8,d.15.10.2	80531,80532
1pm4A	119	77.09	b.135.1.1	94891
2a08A	60	78.24		
1zkiA	133	78.75	d.38.1.5	125199
1aqzA	149	81.95	d.1.1.3	36238
2rauA	354	83.21		
2d49A	53	83.60		
3c7bA	417	83.84		
1mzbA	136	84.15	a.4.5.42	91497
1ootA	60	85.82	b.34.2.1	93386
1vpmA	169	86.86	d.38.1.1	113967
2hnuA	81	87.05		
2uy2A	294	87.80		
1q4uA	151	89.79	d.38.1.5	95828