# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2as0A	396	6.945	b.122.1.9,c.66.1.51	127227,127228
1wxxA	382	7.938	b.122.1.9,c.66.1.51	121418,121419
2gt1A	326	8.780		
1hdfA	102	9.093	b.11.1.1	23627
2fl4A	149	9.394	d.108.1.1	133706
2nudC	35	15.38		
1mveA	243	18.15	b.29.1.2	85140
1vr8A	142	19.25	d.312.1.1	120445
1ouoA	210	19.86	d.4.1.6	93554
2ayhA	214	22.21	b.29.1.2	24172
1mwpA	96	22.80	d.170.2.1	42453
1g5cA	170	25.18	c.53.2.1	60264
1jqnA	883	25.89	c.1.12.3	77159
1fusA	106	26.82	d.1.1.4	36050
3cjsA	60	26.95		
1rdsA	105	27.32	d.1.1.4	36236
1zy9A	564	27.68	b.30.5.11,c.1.8.13	125813,125814
1vi3A	170	27.85	b.17.1.2	100730
1ylkA	172	29.60		
1jk4A	89	31.61	b.9.1.1	77130
1at0	145	31.76		
2o55A	258	32.12		
2jssB	62	32.37		
2hlkA	255	35.32		
2gvhA	288	35.92	d.38.1.1,d.38.1.1	135776,135777
1gbgA	214	38.28	b.29.1.2	24171
1sv6A	269	39.55	d.177.1.1	106043
2rauA	354	40.02		
2eisA	133	40.35		
1dvoA	152	43.01	a.136.1.1	19623
2a6sA	84	44.30	d.298.1.1	126305
2g7eA	211	44.76		
3bgeA	201	46.95		
2hfnA	153	47.54		
2i6cA	160	49.54	d.108.1.1	137095
1x0pA	143	49.67	d.58.10.2	121552
1zkiA	133	54.56	d.38.1.5	125199
2egjA	128	59.40		
3bjkA	153	59.71		
1yliA	153	59.97	d.38.1.1	123651
2bycA	137	61.74	d.58.10.2	129476
2d49A	53	62.05		
2hnuA	81	65.57		
1at0A	145	67.17	b.86.1.1	28374
2ownA	262	68.60		
2dx0A	138	70.66		
1vpmA	169	71.66	d.38.1.1	113967
2e4tA	519	72.09		
3b5qA	482	73.37		
3ba3A	145	73.98		
3b7kA	333	76.65		
2vpzA	765	77.31		
1aqzA	149	81.36	d.1.1.3	36238
2eb4A	267	81.73		
1k55A	246	84.26	e.3.1.1	68156
2essA	248	84.56	d.38.1.8,d.38.1.8	132346,132347
2p9wA	334	85.87		
2g1lA	104	87.07	b.26.1.2	134520
1mzbA	136	87.27	a.4.5.42	91497
1sx5A	244	87.28	c.52.1.2	99023
1zmiA	29	87.82