# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2as0A	396	5.389	b.122.1.9,c.66.1.51	127227,127228
1wxxA	382	6.462	b.122.1.9,c.66.1.51	121418,121419
2gt1A	326	7.767		
1hdfA	102	8.026	b.11.1.1	23627
2fl4A	149	8.574	d.108.1.1	133706
2nudC	35	11.65		
1vr8A	142	11.95	d.312.1.1	120445
1mveA	243	12.69	b.29.1.2	85140
1fusA	106	13.16	d.1.1.4	36050
1rdsA	105	13.18	d.1.1.4	36236
1ouoA	210	13.88	d.4.1.6	93554
3cjsA	60	17.20		
2ayhA	214	19.78	b.29.1.2	24172
1mwpA	96	21.74	d.170.2.1	42453
1vi3A	170	22.69	b.17.1.2	100730
1jqnA	883	23.91	c.1.12.3	77159
1at0	145	26.46		
2a6sA	84	26.84	d.298.1.1	126305
1zy9A	564	26.85	b.30.5.11,c.1.8.13	125813,125814
1g5cA	170	30.73	c.53.2.1	60264
2g7eA	211	32.91		
1ylkA	172	34.51		
2jssB	62	35.14		
1gbgA	214	35.40	b.29.1.2	24171
1jk4A	89	37.02	b.9.1.1	77130
2gvhA	288	37.66	d.38.1.1,d.38.1.1	135776,135777
3ba3A	145	38.22		
2eisA	133	38.43		
2dx0A	138	39.45		
1sv6A	269	39.76	d.177.1.1	106043
2vpzA	765	40.88		
3bgeA	201	40.94		
2hlkA	255	41.09		
2e4tA	519	42.39		
1dvoA	152	46.24	a.136.1.1	19623
3bjkA	153	49.61		
1ni3A	392	54.26	c.37.1.8,d.15.10.2	80531,80532
1at0A	145	55.15	b.86.1.1	28374
1x0pA	143	56.89	d.58.10.2	121552
2hfnA	153	57.96		
1yliA	153	62.76	d.38.1.1	123651
2d49A	53	63.52		
1zkiA	133	63.89	d.38.1.5	125199
1zmiA	29	66.15		
1pm4A	119	68.29	b.135.1.1	94891
1aqzA	149	69.59	d.1.1.3	36238
2egjA	128	69.82		
2hnuA	81	70.80		
2ownA	262	71.29		
1vpmA	169	74.04	d.38.1.1	113967
2bycA	137	75.01	d.58.10.2	129476
1q4uA	151	75.99	d.38.1.5	95828
1sx5A	244	76.32	c.52.1.2	99023
2cjlA	204	77.08		
1mzbA	136	78.35	a.4.5.42	91497
1k55A	246	79.14	e.3.1.1	68156
1vmoA	163	79.66	b.77.1.1	27974
2p9wA	334	82.00		
1ekeA	230	83.93	c.55.3.1	33572
3c7bA	417	87.90		
3b7kA	333	88.44