# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2rauA 354 0.2731 2yykA 481 1.022 2fl4A 149 2.316 d.108.1.1 133706 1hdfA 102 4.094 b.11.1.1 23627 1mvfD 82 4.712 b.129.1.1 85143 1g5cA 170 5.400 c.53.2.1 60264 1mveA 243 7.699 b.29.1.2 85140 1vr8A 142 7.824 d.312.1.1 120445 2gt1A 326 9.455 2dbsA 90 11.69 1mwpA 96 12.61 d.170.2.1 42453 1wxxA 382 12.92 b.122.1.9,c.66.1.51 121418,121419 3bgeA 201 13.35 1aop 497 16.09 2ayhA 214 17.12 b.29.1.2 24172 1aqzA 149 17.15 d.1.1.3 36238 2hljA 157 17.24 d.38.1.1 136570 3cjsA 60 17.31 1xo5A 183 17.47 a.39.1.5 115680 2cc0A 195 17.47 c.6.2.3 130209 2hlkA 255 17.76 1fkqA 124 18.18 d.2.1.2 36601 1b9oA 123 18.22 d.2.1.2 36597 1ukkA 142 19.78 d.227.1.1 99491 3c7bA 417 19.81 2ev0A 142 19.90 a.4.5.24,a.76.1.1 132413,132414 1jqnA 883 19.96 c.1.12.3 77159 2hfnA 153 21.04 1ta3A 274 23.36 c.1.8.5 106731 1rdsA 105 25.38 d.1.1.4 36236 1th0A 226 26.28 d.3.1.7 106903 2nudC 35 26.42 1gbgA 214 26.68 b.29.1.2 24171 2as0A 396 26.85 b.122.1.9,c.66.1.51 127227,127228 1omzA 293 26.97 c.68.1.15 87093 1r2rA 248 28.09 c.1.1.1 96875 2nxcA 254 29.51 c.66.1.39 138739 2czqA 205 29.72 2db7A 64 30.70 1fusA 106 31.45 d.1.1.4 36050 1cnvA 299 31.54 c.1.8.5 28989 1w0mA 226 33.15 c.1.1.1 109027 1sx5A 244 37.55 c.52.1.2 99023 2d49A 53 38.45 2uy2A 294 39.00 2goyA 275 39.08 1qwiA 143 40.27 d.227.1.1 96474 1aopA 497 41.83 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1euvA 221 42.33 d.3.1.7 37133 2bycA 137 42.93 d.58.10.2 129476 1jsmA 325 45.03 b.19.1.2 63264 1n55A 251 45.54 c.1.1.1 80007 2fueA 262 45.83 c.108.1.10 134119 1kv5A 250 46.30 c.1.1.1 73052 2cjlA 204 46.96 2q0tA 263 49.68 1mzbA 136 49.99 a.4.5.42 91497 1x0pA 143 51.01 d.58.10.2 121552 2dmcA 116 51.36 b.1.18.10 131572 2ownA 262 51.44 1nrgA 261 51.98 b.45.1.1 80694 1zkiA 133 52.02 d.38.1.5 125199 1vf6A 83 52.18 a.194.1.1 100600 1zj8A 566 52.34 1cd0A 111 52.36 b.1.1.1 20559 2j27A 250 52.46 2fe3A 145 53.79 1dypA 271 53.95 b.29.1.2 24185 1o5xA 248 56.38 c.1.1.1 92528 1h3oA 75 56.66 a.22.1.3 76644 2h4oA 76 57.53 1mo0A 275 58.72 c.1.1.1 79329 2dp3A 257 60.73 1b9bA 255 60.85 c.1.1.1 28531 2jssB 62 61.77 2r9gA 204 62.00 2dx0A 138 63.78 2iw0A 254 64.03 c.6.2.3 137737 1wmiA 90 65.89 d.298.1.2 121045 2i9fA 69 67.17 2rhfA 77 68.70 1aw2A 256 69.10 c.1.1.1 28523 1yyaA 250 69.31 1kb9I 55 69.46 f.23.14.1 77324 2xatA 212 71.11 b.81.1.3 28058 1m6jA 261 71.60 c.1.1.1 78693 1jk4A 89 72.05 b.9.1.1 77130 2oauA 306 72.53 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 2o55A 258 73.54 2eo2A 71 74.26 1deuA 277 75.21 d.3.1.1 37085 1vi3A 170 75.65 b.17.1.2 100730 2yrrA 353 78.12 1zldA 120 78.55 1s4kA 120 78.66 a.35.1.6 105254 2a6sA 84 81.36 d.298.1.1 126305 1wudA 89 81.40 a.60.8.1 121283 2essA 248 82.50 d.38.1.8,d.38.1.8 132346,132347 1dvoA 152 83.31 a.136.1.1 19623 1ouoA 210 83.59 d.4.1.6 93554 1zx4A 192 86.99 1vmoA 163 87.41 b.77.1.1 27974 2jdiI 50 88.47