# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fl4A	149	5.158	d.108.1.1	133706
1hdfA	102	6.308	b.11.1.1	23627
2as0A	396	8.629	b.122.1.9,c.66.1.51	127227,127228
2nudC	35	10.01		
2gt1A	326	11.13		
1jqnA	883	13.77	c.1.12.3	77159
1ouoA	210	13.99	d.4.1.6	93554
2rauA	354	15.05		
1mveA	243	17.12	b.29.1.2	85140
1rdsA	105	18.92	d.1.1.4	36236
1vr8A	142	19.08	d.312.1.1	120445
1vi3A	170	20.95	b.17.1.2	100730
1mwpA	96	24.71	d.170.2.1	42453
1wxxA	382	25.93	b.122.1.9,c.66.1.51	121418,121419
1fusA	106	27.10	d.1.1.4	36050
2a6sA	84	27.87	d.298.1.1	126305
1g5cA	170	29.11	c.53.2.1	60264
2g7eA	211	29.55		
2ayhA	214	29.77	b.29.1.2	24172
1ylkA	172	30.92		
3cjsA	60	31.41		
1gbgA	214	37.76	b.29.1.2	24171
3bgeA	201	40.41		
2gvhA	288	41.73	d.38.1.1,d.38.1.1	135776,135777
2jssB	62	42.74		
2e4tA	519	44.98		
2vpzA	765	46.19		
1sv6A	269	46.50	d.177.1.1	106043
1at0	145	53.49		
3cvjA	243	54.29		
2eisA	133	55.93		
3cqbA	107	57.33		
1pm4A	119	60.68	b.135.1.1	94891
2hfnA	153	61.56		
2d49A	53	61.80		
3c7bA	417	62.45		
1yliA	153	64.36	d.38.1.1	123651
2bynA	227	68.88		
1x0pA	143	69.10	d.58.10.2	121552
1vpmA	169	70.50	d.38.1.1	113967
1mzbA	136	72.55	a.4.5.42	91497
2ielA	138	73.01		
2phcB	225	73.24		
1uasA	362	76.63	b.71.1.1,c.1.8.1	88388,88389
2hwvA	121	77.20		
2fxtA	192	85.36		
3bjkA	153	87.61		
2npnA	251	88.32		
1at0A	145	89.07	b.86.1.1	28374