# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ayhA 214 2.093 b.29.1.2 24172 1yp2A 451 2.135 b.81.1.4,c.68.1.6 123798,123799 2as0A 396 2.541 b.122.1.9,c.66.1.51 127227,127228 2guyA 478 6.849 b.71.1.1,c.1.8.1 135754,135755 3bq5A 766 7.547 1vrbA 342 8.535 b.82.2.11 120450 1nm1G 125 11.25 d.109.1.1 80653 2biwA 490 12.10 2c0rA 362 12.61 c.67.1.4 129604 2v6oA 596 13.08 1t17A 148 13.76 d.129.3.6 112215 2e4uA 555 14.65 2bg9E 370 14.79 2fl4A 149 15.65 d.108.1.1 133706 7taa 478 16.27 2qvjA 421 16.39 1ohvA 472 16.62 c.67.1.4 93031 2byoA 207 17.01 b.125.1.3 129497 1s1dA 331 17.36 b.67.3.1 98344 2viaA 405 18.06 1bf6A 291 19.21 c.1.9.3 29065 2icyA 469 20.50 b.81.1.4,c.68.1.5 137257,137258 3c7bA 417 21.81 2vidA 204 23.85 1t0gA 109 24.02 d.120.1.2 99063 1ysqA 193 24.39 1qe3A 489 24.43 c.69.1.1 34630 2yziA 138 25.13 2etjA 250 26.31 c.55.3.1 132360 1gpuA 680 27.66 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1rdsA 105 28.23 d.1.1.4 36236 1ex0A 731 29.95 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2d1eA 248 30.29 2gt1A 326 30.93 1io2A 213 30.96 c.55.3.1 62612 1umpA 631 31.44 a.102.4.2,a.102.4.2 99619,99620 1jb0A 755 32.57 f.29.1.1 62820 2nudC 35 33.45 1fusA 106 34.18 d.1.1.4 36050 2hjsA 340 36.08 c.2.1.3,d.81.1.1 136547,136548 2j8mA 172 37.93 1deuA 277 38.83 d.3.1.1 37085 2f96A 224 39.72 c.55.3.5 133153 1ym0A 238 40.06 1mveA 243 41.52 b.29.1.2 85140 2hbtA 247 42.43 1tf1A 198 42.82 d.110.2.2 106826 3bdqA 110 42.84 1m2kA 249 44.13 c.31.1.5 84754 2bycA 137 47.24 d.58.10.2 129476 2p5qA 170 47.69 2de6A 392 49.26 b.33.1.2,d.129.3.3 131415,131416 1eovA 487 49.90 b.40.4.1,d.104.1.1 25239,40760 2j44A 217 50.09 1vl2A 421 50.39 c.26.2.1,d.210.1.1 108708,108709 2p8bA 369 50.41 1sznA 417 50.56 b.71.1.1,c.1.8.1 106162,106163 2d1gA 498 51.64 1zu0A 529 52.19 1n7hA 381 52.25 c.2.1.2 80250 1u0fA 564 53.83 c.80.1.2 112912 1h32B 138 55.05 a.3.1.1 76620 1lniA 96 55.26 d.1.1.2 74046 1t0tV 248 56.95 d.58.4.10 106229 1k8tA 510 58.07 e.41.1.1 68316 1s6yA 450 58.08 c.2.1.5,d.162.1.2 105314,105315 2gvhA 288 58.82 d.38.1.1,d.38.1.1 135776,135777 2zadA 345 59.70 1lwjA 441 59.78 b.71.1.1,c.1.8.1 74303,74304 1pcxA 810 60.31 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1ouoA 210 60.41 d.4.1.6 93554 2rduA 387 61.71 2p39A 155 61.76 2p8iA 117 62.17 d.58.55.1 139522 1i78A 297 64.30 f.4.4.1 66046 1b9hA 388 64.91 c.67.1.4 34488 2o16A 160 66.11 d.37.1.1,d.37.1.1 138869,138870 2bynA 227 67.07 1ylkA 172 67.19 2q40A 367 68.27 e.50.1.1 139814 2cb5A 453 68.47 d.3.1.1 37035 2i7nA 360 69.98 1nl1A 147 72.97 g.14.1.1,g.32.1.1 91949,91950 2a40B 260 74.83 d.151.1.1 126139 1jy1A 464 74.99 d.136.1.3,d.136.1.3 67438,67439 2jgbA 195 75.10 1mtyB 384 75.55 a.25.1.2 16740 2htdA 140 76.49 2vpzA 765 77.21 2pidA 356 77.52 2z6wA 165 77.78 1gvkB 240 79.04 b.47.1.2 70610 1m1zA 513 79.37 c.26.2.1,d.153.1.1 78457,78458 1yewA 382 80.30 1kaeA 434 80.36 c.82.1.2 72247 1wy9A 147 81.19 2ipiA 521 84.60 1c3mA 147 85.20 b.77.3.1 27983 3cjsA 60 86.35 2o0yA 260 86.42 2e4tA 519 87.77 1lg7A 182 88.37 d.213.1.1 73888 2h88A 621 88.43 1wosA 364 88.93 b.44.2.1,d.250.1.1 109468,109469 2nwlA 422 89.71