# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fl4A	149	3.755	d.108.1.1	133706
1hdfA	102	5.853	b.11.1.1	23627
2as0A	396	10.09	b.122.1.9,c.66.1.51	127227,127228
2nudC	35	14.18		
2gt1A	326	14.44		
1vr8A	142	14.94	d.312.1.1	120445
1wxxA	382	15.61	b.122.1.9,c.66.1.51	121418,121419
1mveA	243	21.18	b.29.1.2	85140
2a6sA	84	23.65	d.298.1.1	126305
1ouoA	210	23.86	d.4.1.6	93554
2ayhA	214	24.36	b.29.1.2	24172
1mwpA	96	26.55	d.170.2.1	42453
1rdsA	105	28.07	d.1.1.4	36236
2rauA	354	28.73		
1jqnA	883	31.06	c.1.12.3	77159
3cjsA	60	31.77		
1sv6A	269	33.11	d.177.1.1	106043
1vi3A	170	33.15	b.17.1.2	100730
1ylkA	172	35.15		
1g5cA	170	35.78	c.53.2.1	60264
1fusA	106	35.98	d.1.1.4	36050
3bgeA	201	36.92		
2gvhA	288	39.96	d.38.1.1,d.38.1.1	135776,135777
1gbgA	214	44.96	b.29.1.2	24171
2jssB	62	49.12		
2g7eA	211	49.84		
1at0	145	52.92		
2i6cA	160	53.59	d.108.1.1	137095
2d49A	53	53.66		
2g1lA	104	53.69	b.26.1.2	134520
2eisA	133	55.46		
1pm4A	119	58.59	b.135.1.1	94891
2eb4A	267	59.49		
1jk4A	89	63.29	b.9.1.1	77130
1zmiA	29	65.57		
1zy9A	564	71.45	b.30.5.11,c.1.8.13	125813,125814
1mzbA	136	72.35	a.4.5.42	91497
2e4tA	519	74.35		
2vpzA	765	74.52		
2hfnA	153	74.57		
1wyxA	69	74.82		
2bynA	227	75.06		
2hwvA	121	79.01		
1yliA	153	79.66	d.38.1.1	123651
3c7bA	417	81.25		
1s7kA	182	84.25	d.108.1.1	118878
2byoA	207	84.38	b.125.1.3	129497
1vpmA	169	87.78	d.38.1.1	113967
1yewA	382	88.10		
1at0A	145	88.74	b.86.1.1	28374