# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fl4A	149	4.731	d.108.1.1	133706
2o55A	258	4.918		
1wxxA	382	6.613	b.122.1.9,c.66.1.51	121418,121419
2as0A	396	6.685	b.122.1.9,c.66.1.51	127227,127228
2nudC	35	10.52		
1hdfA	102	10.75	b.11.1.1	23627
1g5cA	170	11.86	c.53.2.1	60264
2gt1A	326	12.62		
1mveA	243	15.12	b.29.1.2	85140
1ouoA	210	16.57	d.4.1.6	93554
1jqnA	883	16.64	c.1.12.3	77159
2ayhA	214	18.18	b.29.1.2	24172
1ylkA	172	19.84		
1vr8A	142	20.89	d.312.1.1	120445
1dvoA	152	22.14	a.136.1.1	19623
2i6cA	160	23.53	d.108.1.1	137095
1jk4A	89	27.82	b.9.1.1	77130
1zy9A	564	27.89	b.30.5.11,c.1.8.13	125813,125814
1rdsA	105	31.14	d.1.1.4	36236
2jssB	62	31.47		
2rauA	354	32.02		
2g7eA	211	32.42		
3cjsA	60	33.13		
1fusA	106	33.24	d.1.1.4	36050
1vi3A	170	34.25	b.17.1.2	100730
3bgeA	201	34.97		
1sv6A	269	40.91	d.177.1.1	106043
1gheA	177	41.29	d.108.1.1	76222
1gbgA	214	46.69	b.29.1.2	24171
2eb4A	267	49.58		
1mwpA	96	49.76	d.170.2.1	42453
2gvhA	288	50.41	d.38.1.1,d.38.1.1	135776,135777
2a6sA	84	52.39	d.298.1.1	126305
1at0	145	53.14		
3c7bA	417	53.57		
2hfnA	153	54.04		
3blnA	143	57.64		
2d49A	53	58.42		
2eisA	133	59.07		
1x0pA	143	62.01	d.58.10.2	121552
2hnuA	81	62.35		
3b5qA	482	63.13		
1s7kA	182	64.71	d.108.1.1	118878
2vpzA	765	65.22		
2g1lA	104	65.27	b.26.1.2	134520
3ba3A	145	66.10		
2bynA	227	68.48		
2fueA	262	70.46	c.108.1.10	134119
2hlkA	255	70.78		
1s3aA	102	71.96	c.47.1.22	118847
1zmiA	29	72.91		
3b7kA	333	73.22		
2pm1A	30	74.01		
1aqzA	149	75.20	d.1.1.3	36238
1yliA	153	75.75	d.38.1.1	123651
2egjA	128	78.34		
2p9wA	334	81.39		
1zkiA	133	82.81	d.38.1.5	125199
2dx0A	138	82.95		
2o1rA	81	83.05		
1pgsA	314	83.09	b.121.1.1,b.121.1.1	23653,23654
2a08A	60	84.36		
2cjlA	204	89.22