# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fl4A	149	2.829	d.108.1.1	133706
1hdfA	102	3.972	b.11.1.1	23627
2nudC	35	4.329		
2as0A	396	5.102	b.122.1.9,c.66.1.51	127227,127228
1vr8A	142	6.005	d.312.1.1	120445
1ouoA	210	7.099	d.4.1.6	93554
1wxxA	382	7.573	b.122.1.9,c.66.1.51	121418,121419
3cjsA	60	10.32		
2o55A	258	10.72		
1g5cA	170	15.39	c.53.2.1	60264
1jk4A	89	15.73	b.9.1.1	77130
1dvoA	152	15.85	a.136.1.1	19623
1mwpA	96	15.88	d.170.2.1	42453
2g7eA	211	16.08		
2gt1A	326	17.35		
1fusA	106	17.76	d.1.1.4	36050
3bgeA	201	18.22		
2g1lA	104	19.08	b.26.1.2	134520
2p9wA	334	19.43		
1jqnA	883	20.48	c.1.12.3	77159
1mveA	243	21.18	b.29.1.2	85140
2rauA	354	21.57		
2eb4A	267	22.50		
2a08A	60	22.85		
2dx0A	138	22.96		
1sv6A	269	23.57	d.177.1.1	106043
2a6sA	84	24.11	d.298.1.1	126305
1ylkA	172	25.75		
1wyxA	69	26.05		
1gheA	177	26.13	d.108.1.1	76222
1rdsA	105	26.45	d.1.1.4	36236
2i6cA	160	26.88	d.108.1.1	137095
3b7kA	333	27.14		
2ayhA	214	27.15	b.29.1.2	24172
1vi3A	170	27.69	b.17.1.2	100730
2jssB	62	32.28		
1zmiA	29	34.21		
1at0	145	36.92		
2egjA	128	37.42		
2pm1A	30	39.38		
1w9sA	142	41.03	b.18.1.10	114416
1ta3A	274	41.08	c.1.8.5	106731
2uy2A	294	41.32		
1uasA	362	42.16	b.71.1.1,c.1.8.1	88388,88389
3ba3A	145	42.54		
1zkiA	133	43.81	d.38.1.5	125199
1yliA	153	44.88	d.38.1.1	123651
2vpzA	765	44.89		
1ootA	60	45.72	b.34.2.1	93386
1sx5A	244	45.91	c.52.1.2	99023
2eisA	133	46.33		
1anfA	370	46.35	c.94.1.1	35776
1uxzA	131	46.51	b.18.1.10	100170
2hwvA	121	47.20		
1anf	370	47.89		
1fsuA	492	48.16	c.76.1.2	35032
1aqzA	149	48.74	d.1.1.3	36238
2gvhA	288	49.36	d.38.1.1,d.38.1.1	135776,135777
1gbgA	214	49.59	b.29.1.2	24171
2hnuA	81	49.87		
2d49A	53	55.76		
2e4tA	519	56.32		
2v1oA	151	60.50		
1yewA	382	60.68		
2o88A	58	61.61		
2as9A	210	61.67		
3b5qA	482	61.89		
1zy9A	564	62.38	b.30.5.11,c.1.8.13	125813,125814
3bjkA	153	64.78		
3c7bA	417	65.52		
1pm4A	119	67.05	b.135.1.1	94891
2gncA	60	67.13		
2phcB	225	67.35		
1cnvA	299	68.06	c.1.8.5	28989
2hlkA	255	68.75		
1e8pA	46	69.67	g.55.1.1	59385
3c66C	26	69.73		
1zlmA	58	70.44		
1cttA	294	70.60	c.97.1.1,c.97.1.1	36022,36023
1aop	497	72.83		
2bynA	227	74.75		
2i1aA	148	76.34		
1y13A	181	77.35	d.96.1.2	116319
2vlqB	134	77.70		
2jrfA	184	79.10		
2hljA	157	81.38	d.38.1.1	136570
2fywA	267	82.71	c.135.1.1	134408
2o5uA	148	83.99		
1gcqA	61	86.57	b.34.2.1	60434
1sznA	417	88.50	b.71.1.1,c.1.8.1	106162,106163
1s3aA	102	89.66	c.47.1.22	118847