# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hdfA	102	5.301	b.11.1.1	23627
2o55A	258	5.672		
2fl4A	149	5.888	d.108.1.1	133706
1wxxA	382	5.922	b.122.1.9,c.66.1.51	121418,121419
2as0A	396	8.585	b.122.1.9,c.66.1.51	127227,127228
2nudC	35	8.632		
2gt1A	326	11.59		
1ouoA	210	13.69	d.4.1.6	93554
1g5cA	170	17.77	c.53.2.1	60264
3cjsA	60	18.27		
2ayhA	214	18.74	b.29.1.2	24172
1sv6A	269	18.95	d.177.1.1	106043
1jqnA	883	22.61	c.1.12.3	77159
2g7eA	211	25.42		
1at0	145	25.55		
1vr8A	142	27.52	d.312.1.1	120445
1rdsA	105	27.94	d.1.1.4	36236
1mveA	243	29.03	b.29.1.2	85140
3bgeA	201	30.91		
1zmiA	29	31.03		
1vi3A	170	31.99	b.17.1.2	100730
1mwpA	96	32.32	d.170.2.1	42453
2pm1A	30	32.34		
1ootA	60	33.04	b.34.2.1	93386
2vpzA	765	35.83		
2a08A	60	39.96		
2gvhA	288	40.79	d.38.1.1,d.38.1.1	135776,135777
2eisA	133	41.43		
1dvoA	152	42.27	a.136.1.1	19623
2rauA	354	42.50		
2eb4A	267	42.67		
2jssB	62	42.90		
2g1lA	104	43.02	b.26.1.2	134520
1fusA	106	43.32	d.1.1.4	36050
3b7kA	333	43.34		
1gbgA	214	43.55	b.29.1.2	24171
1gheA	177	44.29	d.108.1.1	76222
1jk4A	89	47.13	b.9.1.1	77130
1ylkA	172	48.05		
1zy9A	564	50.14	b.30.5.11,c.1.8.13	125813,125814
2a6sA	84	53.31	d.298.1.1	126305
2d49A	53	54.71		
1wyxA	69	57.45		
2hfnA	153	61.28		
1at0A	145	61.37	b.86.1.1	28374
2i6cA	160	62.00	d.108.1.1	137095
1zkiA	133	65.63	d.38.1.5	125199
2bynA	227	68.12		
1uasA	362	69.07	b.71.1.1,c.1.8.1	88388,88389
1s7kA	182	69.54	d.108.1.1	118878
1aqzA	149	69.59	d.1.1.3	36238
2hlkA	255	70.52		
2egjA	128	71.91		
3c7bA	417	73.64		
2uy2A	294	73.80		
1x0pA	143	75.03	d.58.10.2	121552
3b5qA	482	75.94		
3bjkA	153	77.17		
1sx5A	244	78.93	c.52.1.2	99023
1vpmA	169	79.29	d.38.1.1	113967
2byoA	207	80.07	b.125.1.3	129497
2p9wA	334	80.45		
1yliA	153	81.71	d.38.1.1	123651
2e4tA	519	81.95		
1pgsA	314	82.57	b.121.1.1,b.121.1.1	23653,23654
1n0zA	45	83.98	g.41.11.1	85247
1cd0A	111	88.06	b.1.1.1	20559
2bycA	137	89.57	d.58.10.2	129476