# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ukkA 142 0.1822 d.227.1.1 99491 1qwiA 143 0.3644 d.227.1.1 96474 2yykA 481 0.5541 2dbsA 90 0.7349 2nxcA 254 1.215 c.66.1.39 138739 1zb9A 143 1.216 2rauA 354 3.004 2pgdA 482 3.720 a.100.1.1,c.2.1.6 18778,30190 2xatA 212 5.790 b.81.1.3 28058 2jssB 62 5.882 2fe3A 145 7.081 2dx0A 138 7.249 2a08A 60 8.435 1mvfD 82 9.232 b.129.1.1 85143 1vlaA 150 9.600 d.227.1.2 108735 2onfA 140 11.17 1ootA 60 11.38 b.34.2.1 93386 2vkjA 106 12.18 2jraA 67 12.44 1mzbA 136 12.70 a.4.5.42 91497 1bbzA 58 15.82 b.34.2.1 24477 1b4pA 217 17.49 a.45.1.1,c.47.1.5 83158,83159 2o88A 58 18.86 2q0tA 263 19.65 2fueA 262 20.08 c.108.1.10 134119 1uspA 139 20.19 d.227.1.1 99879 3ba3A 145 20.48 2j6fA 62 21.60 2dmcA 116 22.36 b.1.18.10 131572 1cr1A 296 23.09 c.37.1.11 32286 1j0pA 108 23.66 a.138.1.1 90743 1hdfA 102 23.68 b.11.1.1 23627 2hljA 157 24.32 d.38.1.1 136570 1gyoA 109 26.16 a.138.1.1 70763 2dxcB 157 26.87 2ayjA 56 27.08 1mo0A 275 27.63 c.1.1.1 79329 2hepA 85 28.14 1w0mA 226 30.58 c.1.1.1 109027 2rmsB 61 31.09 1z08A 170 32.00 c.37.1.8 124303 1deuA 277 32.87 d.3.1.1 37085 2burA 209 33.94 b.3.6.1 129227 1n55A 251 34.68 c.1.1.1 80007 2pgd 482 35.51 2ev0A 142 36.47 a.4.5.24,a.76.1.1 132413,132414 1m6jA 261 38.00 c.1.1.1 78693 2a28A 54 39.24 1aw2A 256 39.88 c.1.1.1 28523 1pf5A 131 39.90 d.79.1.1 94604 1th0A 226 40.28 d.3.1.7 106903 1r2rA 248 40.91 c.1.1.1 96875 3bjoA 103 43.12 2dp3A 257 43.14 1wwcA 118 43.70 b.1.1.4 21778 1kv5A 250 44.08 c.1.1.1 73052 1jk4A 89 44.95 b.9.1.1 77130 2ouwA 138 46.45 1vr8A 142 47.08 d.312.1.1 120445 2bjoA 136 48.59 2ql8A 143 48.67 3b47A 134 48.93 2nocA 99 50.06 1gcqA 61 51.40 b.34.2.1 60434 1wxxA 382 51.66 b.122.1.9,c.66.1.51 121418,121419 3b42A 135 51.71 2gc1A 188 51.84 b.82.1.7 134928 1yyaA 250 52.84 1yzqA 170 53.08 c.37.1.8 124286 1zlmA 58 54.76 2j27A 250 56.50 1yymG 313 57.09 d.172.1.1 124232 1egiA 147 59.44 d.169.1.1 42331 2drmA 58 59.88 2f57A 317 60.26 2inpE 118 60.47 1a0cA 438 62.67 c.1.15.3 29529 2if1A 126 62.92 d.64.1.1 39547 1b9bA 255 63.52 c.1.1.1 28531 2a3mA 130 63.54 2j7nA 1022 64.02 1vi3A 170 65.58 b.17.1.2 100730 1v54G 85 66.40 f.23.2.1 100328 1rzhM 307 66.76 f.26.1.1 98165 1euvA 221 67.74 d.3.1.7 37133 1semA 58 67.83 b.34.2.1 24544 1wyxA 69 69.49 1g9pA 45 69.54 g.3.6.2 65171 1ansA 27 71.70 g.11.1.1 44608 2cpcA 113 72.11 1xrsB 262 72.38 c.23.6.1,d.230.4.1 115884,115885 1nrgA 261 73.45 b.45.1.1 80694 2gb7A 305 73.68 2axtI 38 75.67 2p9wA 334 75.85 1fusA 106 77.01 d.1.1.4 36050 1aop 497 79.13 1o5xA 248 79.21 c.1.1.1 92528 1fsuA 492 80.01 c.76.1.2 35032 3cx5I 65 80.07 2a6sA 84 81.07 d.298.1.1 126305 1zx6A 58 82.69 2as0A 396 83.25 b.122.1.9,c.66.1.51 127227,127228 2o30A 131 85.63 2dgmA 466 85.82 c.67.1.6 131508 1buoA 121 86.05 d.42.1.1 38631 2bzwB 27 86.45 2g6fX 59 86.55 3breA 358 88.09 1wlmA 151 88.35 a.39.1.11 121008 1uj0A 62 89.10 b.34.2.1 99449 3pcgA 200 89.27 b.3.6.1 22647 2hr0A 645 89.43 1mveA 243 89.88 b.29.1.2 85140