# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yykA 481 0.9281 2rauA 354 1.266 1csh 435 2.101 1vr8A 142 3.749 d.312.1.1 120445 2oauA 306 4.997 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1cshA 435 5.086 a.103.1.1 18880 3ba3A 145 5.261 1g5cA 170 5.378 c.53.2.1 60264 1dvoA 152 5.994 a.136.1.1 19623 2nxcA 254 7.991 c.66.1.39 138739 1g0dA 695 8.235 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1cr1A 296 8.308 c.37.1.11 32286 1mveA 243 8.493 b.29.1.2 85140 1wxxA 382 8.596 b.122.1.9,c.66.1.51 121418,121419 1mvfD 82 8.600 b.129.1.1 85143 2as0A 396 8.650 b.122.1.9,c.66.1.51 127227,127228 2uy2A 294 10.47 1ta3A 274 12.12 c.1.8.5 106731 1ukkA 142 12.37 d.227.1.1 99491 2egjA 128 13.13 1aop 497 13.67 1hdfA 102 13.92 b.11.1.1 23627 2q0tA 263 16.08 1mwpA 96 16.48 d.170.2.1 42453 1mzbA 136 17.11 a.4.5.42 91497 1cnvA 299 17.72 c.1.8.5 28989 1b9oA 123 19.45 d.2.1.2 36597 1ylkA 172 21.15 1khcA 147 22.45 b.34.9.2 68608 2hfnA 153 22.96 1vmoA 163 24.98 b.77.1.1 27974 1pgsA 314 25.11 b.121.1.1,b.121.1.1 23653,23654 3ck1A 150 25.20 2vkjA 106 25.31 2cc0A 195 25.71 c.6.2.3 130209 1aopA 497 26.59 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 3bgeA 201 26.60 2fe3A 145 27.64 1pm4A 119 28.03 b.135.1.1 94891 2fujA 137 28.13 d.38.1.1 134175 2fueA 262 28.26 c.108.1.10 134119 1rdsA 105 28.28 d.1.1.4 36236 2gxaA 274 28.89 1fusA 106 29.11 d.1.1.4 36050 2r9gA 204 29.19 2v7pA 310 31.32 2hljA 157 34.19 d.38.1.1 136570 1ru8A 232 37.15 c.26.2.1 97849 1dcsA 311 37.46 b.82.2.1 28124 1nrgA 261 38.43 b.45.1.1 80694 2ayhA 214 38.49 b.29.1.2 24172 1th0A 226 39.23 d.3.1.7 106903 1jxcA 68 40.61 g.3.7.5 77201 1vi3A 170 41.67 b.17.1.2 100730 2dbsA 90 41.84 2z5eA 122 41.89 1wwcA 118 44.67 b.1.1.4 21778 2yqcA 486 46.05 1yiqA 689 47.44 2dexX 671 48.54 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 1ex0A 731 49.56 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1fkqA 124 50.38 d.2.1.2 36601 2iw0A 254 50.47 c.6.2.3 137737 2g1lA 104 50.63 b.26.1.2 134520 1aqzA 149 51.03 d.1.1.3 36238 1lfpA 249 51.97 e.39.1.1 73885 1at0 145 54.36 1jqnA 883 55.32 c.1.12.3 77159 1deuA 277 56.24 d.3.1.1 37085 1cqmA 101 58.33 d.58.14.1 39321 2hepA 85 59.08 1dypA 271 61.58 b.29.1.2 24185 1z54A 132 61.69 d.38.1.1 124450 1c01A 76 62.72 b.11.1.5 23633 3b5mA 205 63.24 1y89A 238 63.32 1jk4A 89 63.66 b.9.1.1 77130 1i0vA 104 65.30 d.1.1.4 36054 2nq5A 755 65.48 1x4tA 92 65.74 a.2.15.1 121698 1s1dA 331 66.87 b.67.3.1 98344 1gbgA 214 69.17 b.29.1.2 24171 2hxjA 144 69.49 2orzA 314 69.77 2dx0A 138 71.03 2gt1A 326 72.86 2o88A 58 73.21 1fsuA 492 73.47 c.76.1.2 35032 1fg7A 356 74.45 c.67.1.1 59819 2o5uA 148 74.88 2hlkA 255 76.68 2a08A 60 78.81 1w7cA 747 80.03 1s5uA 138 80.28 d.38.1.1 98573 1wyxA 69 82.20 1ootA 60 82.47 b.34.2.1 93386 2a6sA 84 83.15 d.298.1.1 126305 2yrrA 353 83.32 1lo7A 141 84.73 d.38.1.1 74144 1cd0A 111 85.54 b.1.1.1 20559 2oap1 511 86.86 2fl4A 149 88.02 d.108.1.1 133706 1svyA 114 89.07 d.109.1.1 40831 2ig8A 144 89.34 1pyfA 312 89.39 c.1.7.1 95334