# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hljA 157 1.081 d.38.1.1 136570 3pcgA 200 1.838 b.3.6.1 22647 16pk 415 4.375 16pkA 415 6.027 c.86.1.1 35454 2e1mB 130 8.418 1nb8A 353 9.639 d.3.1.9 80385 1zboA 210 10.25 b.122.1.10 124859 1n82A 331 13.80 c.1.8.3 91703 2burA 209 14.09 b.3.6.1 129227 1g1xC 88 15.27 a.4.8.1 16249 1zbxB 141 16.33 d.339.1.1 124877 3d1uA 288 17.26 2d56A 53 18.31 1ie9A 259 18.48 a.123.1.1 62318 1z1aA 142 18.85 d.339.1.1 124344 2f6hX 419 19.10 1v6zA 228 19.70 b.122.1.2,c.116.1.5 113551,113552 1ru8A 232 21.00 c.26.2.1 97849 1nofA 383 21.63 b.71.1.2,c.1.8.3 92020,92021 1xkrA 206 22.17 d.252.1.1 115421 1v6sA 390 22.49 c.86.1.1 100424 2gq0A 303 23.06 1xyiA 66 23.09 2vlqB 134 23.55 2p75A 177 23.61 1hdoA 206 23.66 c.2.1.2 60965 2douA 376 23.75 1umwA 237 23.82 d.223.1.2,d.223.1.2 99631,99632 2h3jA 75 24.57 1v37A 177 24.96 c.60.1.1 113497 2o9uX 97 28.37 d.17.1.1 138960 1xebA 150 28.38 d.108.1.1 115219 1nycA 111 29.41 b.61.2.2 92336 2nxpA 156 30.36 2bvlA 543 31.19 1fr2B 134 31.28 d.4.1.1 83257 1r0pA 312 31.88 d.144.1.7 96734 2a07F 93 32.14 a.4.5.14 125938 1xg7A 250 34.79 a.96.1.6 115281 1squA 155 34.97 d.252.1.1 98971 2gviA 204 37.27 2cosA 54 37.37 a.5.2.1 130683 1efnB 152 37.61 d.102.1.1 40699 1rtu 114 40.19 1i0vA 104 40.95 d.1.1.4 36054 2axtB 510 43.01 3cqbA 107 43.62 1ny1A 240 43.93 c.6.2.3 86395 2a9iA 113 44.08 1ta3A 274 47.45 c.1.8.5 106731 2ijrA 300 48.10 1y9zA 441 49.39 2oewA 380 49.42 1ivnA 190 49.44 c.23.10.5 83719 2jgdA 933 51.01 1tt8A 164 52.84 d.190.1.1 112635 1zdnA 158 53.22 d.20.1.1 124943 2ffuA 501 54.50 2nzxA 371 55.27 2r1iA 172 56.32 3bqsA 93 56.95 1t4oA 117 57.56 d.50.1.1 106425 1tocR 120 58.27 g.8.1.2,g.8.1.2 44558,44559 1v4aA 440 59.07 a.24.16.4,d.218.1.9 108350,108351 1t0fC 54 59.12 1cnvA 299 59.56 c.1.8.5 28989 1vk9A 151 61.65 c.97.1.3 108640 1r4xA 275 63.05 b.1.10.3,d.105.1.2 97054,97055 1uliA 460 63.47 b.33.1.2,d.129.3.3 107921,107922 2yxyA 115 63.90 1h8eI 50 64.11 a.137.8.1 60758 3b4qA 94 65.95 1rdsA 105 66.92 d.1.1.4 36236 2fi9A 128 72.33 c.103.1.1 133513 1njrA 284 73.99 c.50.1.2 103858 1cjwA 166 74.82 d.108.1.1 40818 2jdiI 50 75.47 1enfA 212 75.66 b.40.2.2,d.15.6.1 25198,37787 2ft0A 235 77.40 2nppB 449 77.50 a.118.1.20 138445 2j2fA 363 78.84 1molA 94 79.84 d.17.1.1 37988 1v58A 241 81.40 c.47.1.9,d.17.3.1 108371,108372 2oiwA 136 81.92 1iojA 57 82.15 j.39.1.1 46293 1v33A 366 83.46 d.264.1.1 100278 2pd6A 264 84.26 2ocgA 254 84.72 2gykB 134 85.35 d.4.1.1 135857 1thmA 279 85.63 c.41.1.1 32544 1q3iA 214 87.92 d.220.1.1 104524