Best Alignments for T0484

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1hdfA	1.5747e+01	1hdfA/T0484-1hdfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.11.1.1
2oryA	1.5826e+01	2oryA/T0484-2oryA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1o1zA	1.5926e+01	1o1zA/T0484-1o1zA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.18.3
2fxtA	1.9075e+01	2fxtA/T0484-2fxtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y93A	1.9249e+01	1y93A/T0484-1y93A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.92.1.11
2nudC	1.9529e+01	2nudC/T0484-2nudC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qmjA	2.0137e+01	2qmjA/T0484-2qmjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vr8A	2.1697e+01	1vr8A/T0484-1vr8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.312.1.1
2v1oA	2.3237e+01	2v1oA/T0484-2v1oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wxxA	2.6032e+01	1wxxA/T0484-1wxxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.122.1.9 c.66.1.51
1rdsA	2.6411e+01	1rdsA/T0484-1rdsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.1.1.4
3cjsA	3.0723e+01	3cjsA/T0484-3cjsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gvhA	3.5197e+01	2gvhA/T0484-2gvhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.38.1.1 d.38.1.1
1n7oA	3.5872e+01	1n7oA/T0484-1n7oA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.102.3.2 b.24.1.1 b.30.5.2
2bmoA	3.6323e+01	2bmoA/T0484-2bmoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.33.1.2 d.129.3.3
1eguA	3.6469e+01	1eguA/T0484-1eguA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.102.3.2 b.24.1.1 b.30.5.2
1p3cA	3.7794e+01	1p3cA/T0484-1p3cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.47.1.1
1uv6A	3.9285e+01	1uv6A/T0484-1uv6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.96.1.1
1g5cA	4.0177e+01	1g5cA/T0484-1g5cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.53.2.1
3bjkA	4.1809e+01	3bjkA/T0484-3bjkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001