# TARGET T0484 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0484.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 24.982 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.079 0.036 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.100 0.121 0.593 2 R 0.037 0.069 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.074 0.061 0.119 0.624 3 D 0.088 0.088 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.048 0.100 0.620 4 M 0.086 0.039 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.167 0.108 0.532 5 T 0.071 0.137 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.089 0.106 0.527 6 E 0.090 0.070 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.035 0.088 0.665 7 E 0.065 0.025 0.020 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.073 0.113 0.620 8 T 0.305 0.022 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.052 0.086 0.501 9 R 0.333 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.047 0.063 0.530 10 K 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.013 0.101 0.849 11 D 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.071 0.915 12 L 0.005 0.043 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.013 0.112 0.806 13 P 0.142 0.759 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.031 0.009 0.052 14 P 0.092 0.849 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.007 0.026 15 E 0.032 0.810 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.045 0.018 0.084 16 A 0.039 0.884 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.022 0.006 0.040 17 L 0.018 0.914 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.019 0.006 0.036 18 R 0.008 0.937 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.004 0.029 19 A 0.010 0.955 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.002 0.013 20 L 0.020 0.900 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.005 0.016 21 A 0.010 0.944 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.004 0.020 22 E 0.011 0.939 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.003 0.022 23 A 0.016 0.917 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.005 0.024 24 E 0.018 0.917 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.004 0.023 25 E 0.019 0.873 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.006 0.038 26 R 0.024 0.891 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.007 0.037 27 R 0.022 0.834 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.058 0.012 0.063 28 R 0.025 0.897 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.006 0.040 29 R 0.070 0.798 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.056 0.010 0.052 30 A 0.103 0.322 0.039 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.276 0.040 0.211 31 K 0.272 0.232 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.107 0.067 0.291 32 A 0.149 0.065 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.102 0.093 0.568 33 L 0.020 0.026 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.037 0.128 0.760 34 D 0.017 0.044 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.021 0.105 0.795 35 L 0.059 0.110 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.074 0.115 0.603 36 P 0.244 0.054 0.015 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.186 0.080 0.386 37 K 0.239 0.016 0.019 0.001 0.017 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.090 0.093 0.487 38 E 0.154 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.024 0.072 0.695 39 I 0.057 0.003 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.048 0.105 0.739 40 G 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.025 0.147 0.775 41 G 0.077 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.084 0.085 0.103 0.627 42 R 0.018 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.062 0.049 0.122 0.728 43 N 0.016 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.021 0.087 0.818 44 G 0.043 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.005 0.001 0.009 0.005 0.002 0.001 0.088 0.053 0.104 0.666 45 P 0.034 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.003 0.002 0.067 0.041 0.115 0.712 46 E 0.063 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.006 0.002 0.003 0.002 0.003 0.003 0.235 0.049 0.099 0.495 47 P 0.030 0.012 0.002 0.001 0.002 0.001 0.002 0.001 0.002 0.001 0.002 0.001 0.003 0.004 0.004 0.003 0.119 0.039 0.115 0.654 48 V 0.042 0.015 0.003 0.001 0.004 0.003 0.004 0.003 0.001 0.001 0.001 0.001 0.004 0.005 0.010 0.004 0.377 0.051 0.093 0.378 49 R 0.099 0.024 0.001 0.001 0.002 0.003 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.002 0.290 0.060 0.082 0.418 50 F 0.025 0.038 0.001 0.001 0.002 0.007 0.011 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.167 0.049 0.142 0.552 51 G 0.011 0.064 0.002 0.001 0.001 0.004 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.181 0.041 0.120 0.565 52 D 0.120 0.172 0.015 0.003 0.007 0.012 0.002 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.186 0.094 0.319 53 W 0.085 0.030 0.095 0.003 0.052 0.002 0.001 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.177 0.083 0.421 54 E 0.469 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.042 0.033 0.423 55 K 0.107 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.045 0.063 0.747 56 K 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.010 0.125 0.831 57 G 0.008 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.009 0.015 0.003 0.002 0.001 0.002 0.003 0.313 0.083 0.096 0.437 58 I 0.025 0.008 0.001 0.001 0.001 0.002 0.001 0.001 0.065 0.067 0.012 0.006 0.003 0.005 0.004 0.011 0.168 0.119 0.083 0.418 59 A 0.018 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.011 0.013 0.004 0.002 0.262 0.064 0.069 0.545 60 I 0.017 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.042 0.014 0.002 0.297 0.060 0.079 0.446 61 D 0.027 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.002 0.162 0.052 0.119 0.615 62 F 0.033 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.163 0.070 0.113 0.598