# TARGET T0484 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0484.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 24.982 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.090 0.028 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.009 0.036 0.771 2 R 0.023 0.017 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.003 0.075 0.818 3 D 0.027 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.003 0.040 0.887 4 M 0.179 0.045 0.009 0.002 0.002 0.001 0.002 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.123 0.016 0.104 0.503 5 T 0.054 0.060 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.056 0.007 0.232 0.579 6 E 0.062 0.034 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.012 0.075 0.758 7 E 0.174 0.088 0.008 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.004 0.001 0.007 0.002 0.001 0.001 0.074 0.016 0.162 0.453 8 T 0.083 0.099 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.009 0.171 0.585 9 R 0.150 0.172 0.010 0.001 0.002 0.002 0.001 0.001 0.013 0.006 0.001 0.002 0.001 0.001 0.001 0.001 0.120 0.026 0.055 0.434 10 K 0.082 0.195 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.015 0.125 0.516 11 D 0.180 0.041 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.037 0.034 0.074 0.623 12 L 0.504 0.034 0.075 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.017 0.069 0.249 13 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.991 14 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 15 E 0.021 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.202 0.761 16 A 0.569 0.049 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.037 0.337 17 L 0.246 0.581 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.004 0.015 0.138 18 R 0.103 0.732 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.004 0.022 0.129 19 A 0.091 0.641 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.012 0.009 0.237 20 L 0.122 0.710 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.024 0.008 0.123 21 A 0.060 0.787 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.006 0.025 0.113 22 E 0.083 0.737 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.011 0.018 0.144 23 A 0.095 0.808 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.012 0.004 0.075 24 E 0.032 0.810 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.015 0.130 25 E 0.034 0.799 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.010 0.021 0.127 26 R 0.064 0.815 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.014 0.006 0.096 27 R 0.089 0.764 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.014 0.011 0.115 28 R 0.052 0.786 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.013 0.013 0.124 29 R 0.041 0.756 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.015 0.011 0.164 30 A 0.048 0.664 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.012 0.006 0.259 31 K 0.086 0.693 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.019 0.015 0.176 32 A 0.355 0.483 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.045 0.006 0.099 33 L 0.231 0.493 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.027 0.009 0.182 34 D 0.073 0.063 0.020 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.017 0.013 0.786 35 L 0.159 0.029 0.057 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.062 0.013 0.058 0.610 36 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 37 K 0.008 0.004 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.001 0.058 0.891 38 E 0.188 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.096 0.005 0.112 0.548 39 I 0.231 0.174 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.003 0.002 0.005 0.003 0.001 0.002 0.120 0.014 0.044 0.391 40 G 0.162 0.081 0.004 0.001 0.001 0.001 0.001 0.002 0.003 0.009 0.002 0.001 0.002 0.001 0.001 0.001 0.143 0.027 0.050 0.508 41 G 0.146 0.012 0.036 0.002 0.001 0.001 0.001 0.001 0.009 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.039 0.009 0.142 0.591 42 R 0.016 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.116 0.002 0.064 0.788 43 N 0.031 0.009 0.002 0.002 0.003 0.003 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.121 0.010 0.093 0.716 44 G 0.203 0.005 0.006 0.002 0.003 0.003 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.067 0.009 0.080 0.615 45 P 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.015 0.951 46 E 0.052 0.007 0.003 0.001 0.008 0.016 0.013 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.223 0.004 0.113 0.544 47 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 48 V 0.024 0.005 0.002 0.001 0.006 0.005 0.023 0.004 0.001 0.002 0.001 0.001 0.003 0.003 0.002 0.002 0.511 0.002 0.057 0.346 49 R 0.038 0.017 0.001 0.001 0.002 0.002 0.002 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.335 0.002 0.088 0.500 50 F 0.035 0.066 0.002 0.001 0.001 0.001 0.004 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.438 0.005 0.083 0.349 51 G 0.028 0.029 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.002 0.509 0.007 0.118 0.290 52 D 0.101 0.021 0.005 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.005 0.002 0.011 0.026 0.013 0.005 0.163 0.015 0.133 0.495 53 W 0.017 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.041 0.009 0.002 0.002 0.112 0.004 0.038 0.753 54 E 0.015 0.038 0.003 0.002 0.005 0.002 0.001 0.001 0.016 0.047 0.005 0.001 0.003 0.001 0.001 0.001 0.180 0.006 0.388 0.286 55 K 0.072 0.058 0.002 0.001 0.001 0.001 0.001 0.001 0.379 0.013 0.002 0.002 0.001 0.001 0.001 0.001 0.148 0.020 0.094 0.203 56 K 0.081 0.151 0.004 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.195 0.021 0.067 0.468 57 G 0.125 0.026 0.028 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.186 0.084 0.082 0.461 58 I 0.167 0.009 0.161 0.010 0.004 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.284 0.019 0.097 0.238 59 A 0.002 0.004 0.005 0.003 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.800 0.001 0.046 0.123 60 I 0.003 0.004 0.002 0.003 0.199 0.061 0.010 0.005 0.001 0.001 0.001 0.001 0.004 0.004 0.004 0.004 0.541 0.002 0.039 0.110 61 D 0.004 0.008 0.001 0.001 0.003 0.004 0.005 0.003 0.008 0.005 0.009 0.003 0.006 0.007 0.005 0.010 0.518 0.004 0.074 0.322 62 F 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.002 0.001 0.001 0.002 0.002 0.003 0.469 0.002 0.094 0.405