# List of top-scoring protein chains for T0484.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bjsA 325 0.1123 b.82.2.1 128632 1odmA 331 0.1137 b.82.2.1 86875 2a36A 59 8.060 2bypA 214 8.591 1kb3A 496 8.773 b.71.1.1,c.1.8.1 72269,72270 1kgxA 496 8.860 b.71.1.1,c.1.8.1 68602,68603 3c84A 227 8.914 1kbkA 496 8.952 b.71.1.1,c.1.8.1 72282,72283 1kguA 496 8.966 b.71.1.1,c.1.8.1 68598,68599 1kgwA 496 8.987 b.71.1.1,c.1.8.1 68600,68601 2pgzA 230 8.991 3baxA 496 9.008 1hnyA 496 9.018 b.71.1.1,c.1.8.1 27769,28756 2cpuA 496 9.029 b.71.1.1,c.1.8.1 63334,63335 1jxkA 491 9.831 b.71.1.1,c.1.8.1 63316,63317 1smdA 496 9.842 b.71.1.1,c.1.8.1 27768,28755 1z32X 496 9.865 b.71.1.1,c.1.8.1 124394,124395 1jxjA 496 9.98 b.71.1.1,c.1.8.1 63314,63315 2c9tA 217 10.41 1nm9A 496 10.49 b.71.1.1,c.1.8.1 91974,91975 2a37A 59 11.41 1iakB 185 11.82 b.1.1.2,d.19.1.1 21626,38200 1d9kD 188 12.21 b.1.1.2,d.19.1.1 21628,38202 1k2dB 189 13.23 b.1.1.2,d.19.1.1 84293,84294 1mujB 197 13.28 b.1.1.2,d.19.1.1 79490,79491 2pxyD 189 13.29 1ns5A 155 13.76 c.116.1.3 80705 1kbbA 496 13.89 b.71.1.1,c.1.8.1 72275,72276 1f3jB 187 14.15 b.1.1.2,d.19.1.1 21646,38220 2a28A 54 15.00 1es0B 221 15.60 b.1.1.2,d.19.1.1 21644,38218 2iadB 205 15.65 b.1.1.2,d.19.1.1 21640,38214 1iaoB 222 16.05 b.1.1.2,d.19.1.1 21642,38216 2p24B 259 16.08 1lnuB 217 16.97 b.1.1.2,d.19.1.1 74099,74100 1pr9A 244 17.30 c.2.1.2 95060 1jk8B 190 18.20 b.1.1.2,d.19.1.1 63147,63148 2jbrA 422 19.08 2f2bA 246 19.22 1kkhA 317 19.86 d.14.1.5,d.58.26.3 72645,72646 2fseB 187 20.15 b.1.1.2,d.19.1.1 134019,134020 1visA 324 20.31 d.14.1.5,d.58.26.3 100769,100770 1uhcA 79 20.34 b.34.2.1 99397 1waaF 93 20.64 1waaA 93 20.72 1titA 98 20.73 b.1.1.4 21716 2dkfA 431 20.84 2yvdA 431 20.95 2nnaB 207 21.49 1ag4A 103 21.62 b.11.1.1 23629 1hdfA 102 21.80 b.11.1.1 23627 1nj8A 459 21.87 c.51.1.1,d.68.5.1,d.104.1.1 85769,85770,85771 1waaE 93 22.23 2i99A 312 22.75 1s9vB 198 23.63 b.1.1.2,d.19.1.1 98762,98763 1yvvA 336 28.68 1cjcA 460 28.71 c.3.1.1,c.4.1.1 30319,30604 2pmaA 146 29.75 2nudC 35 32.39 1uvqB 198 32.92 b.1.1.2,d.19.1.1 100064,100065 2da9A 70 34.68 1qltA 560 34.82 d.58.32.1,d.145.1.1 39457,41720 1rc6A 261 36.03 b.82.1.11 97287 2i76A 276 36.50 1r5vB 185 37.88 b.1.1.2,d.19.1.1 97118,97119 1v0eA 666 39.27 b.68.1.2,b.108.1.3 113466,113467 1ktdB 215 39.70 b.1.1.2,d.19.1.1 72966,72967 1fngB 224 40.55 b.1.1.2,d.19.1.1 59906,59907 1ieaB 228 40.62 b.1.1.2,d.19.1.1 21632,38206 1fneB 224 40.88 b.1.1.2,d.19.1.1 59898,59899 1kt2B 213 41.47 b.1.1.2,d.19.1.1 72953,72954 1ootA 60 41.90 b.34.2.1 93386 2hl7A 84 42.86 1iebB 227 43.18 b.1.1.2,d.19.1.1 21636,38210 2pg0A 385 43.60 1wk9A 146 47.05 b.51.1.1 120977 1wkaA 147 47.62 b.51.1.1 120978 2i33A 258 48.36 2eweA 353 49.49 2iecA 131 49.61 d.316.1.1 137300 1o88A 353 50.04 b.80.1.1 81178 1so3A 216 50.86 c.1.2.3 105834 1q6oA 216 51.01 c.1.2.3 95986 3cz5A 153 51.28 2dlmA 68 51.41 1vr8A 142 52.07 d.312.1.1 120445 1azeA 56 52.11 b.34.2.1 24536 2cwdA 161 52.59 2db7A 64 52.72 1x0gA 112 53.61 2egeA 75 55.40 1so4A 216 55.42 c.1.2.3 105836 1y12A 165 56.96 b.157.1.1 122516 1vjjA 692 58.28 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1a6bB 40 58.43 g.40.1.1 45172 2o1sA 621 58.99 1udlA 98 59.88 b.34.2.1 99212 1ni3A 392 61.08 c.37.1.8,d.15.10.2 80531,80532 3cjsA 59 61.59 2drmA 58 61.91 1espA 317 61.91 d.92.1.2 58979 1ldrA 43 62.02 g.12.1.1 44616 1npcA 317 63.00 d.92.1.2 59012 2drkA 59 64.53 2nwmA 65 64.62 2aliA 158 66.19 d.38.1.1 126976 1rleA 692 66.24 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 97638,97639,97640,97641 2q22A 139 67.37 1xbyA 216 67.90 c.1.2.3 121846 1agiA 125 68.09 d.5.1.1 37303 1mveA 243 68.62 b.29.1.2 85140 1xbzA 216 68.69 c.1.2.3 121848 1q4nX 496 69.02 b.71.1.1,c.1.8.1 95807,95808 1zm1A 241 69.28 b.29.1.2 125278 1fnyA 237 71.27 b.29.1.1 59920 2p4aB 121 72.07 2j6fA 62 72.56 2bzyA 67 72.57 1pkvA 97 77.37 b.43.4.3 104168 1y1uA 585 80.22 2opkA 112 80.24 1zuuA 58 80.92 b.34.2.1 125688 1td9A 329 81.36 c.77.1.5 112391 1uueA 62 81.93 b.34.2.1 100005 2dm1A 73 84.01 1u6pA 56 84.22 g.40.1.1 113073 2djqA 68 86.04 2dmoA 68 87.09 1vcoA 550 88.13 c.23.16.1,c.37.1.10 108508,108509 1vcnA 550 89.34 c.23.16.1,c.37.1.10 108506,108507