# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hdfA 102 4.367 b.11.1.1 23627 2nudC 35 4.606 2oryA 346 5.831 1vr8A 142 6.180 d.312.1.1 120445 2qmjA 870 7.091 2gvhA 288 7.465 d.38.1.1,d.38.1.1 135776,135777 1y93A 159 7.532 d.92.1.11 122772 1rdsA 105 7.865 d.1.1.4 36236 2fxtA 192 8.925 3cjsA 60 9.215 1o1zA 234 9.907 c.1.18.3 86555 2eisA 133 10.57 3bjkA 153 10.76 1pm4A 119 10.98 b.135.1.1 94891 1p3cA 215 11.18 b.47.1.1 93996 1zkiA 133 11.36 d.38.1.5 125199 2v1oA 151 11.90 1ixlA 131 12.03 d.38.1.5 90717 1n7oA 721 12.42 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1dfnA 30 12.46 g.9.1.1 44570 1zmiA 29 12.66 1eguA 731 12.87 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1qw9A 502 16.57 b.71.1.2,c.1.8.3 96466,96467 1wxxA 382 16.72 b.122.1.9,c.66.1.51 121418,121419 1vmoA 163 16.95 b.77.1.1 27974 1sv6A 269 16.95 d.177.1.1 106043 1f60B 94 17.82 d.58.12.1 39307 1wluA 136 18.10 d.38.1.5 121015 1uv6A 210 18.54 b.96.1.1 100030 2bmoA 447 18.59 b.33.1.2,d.129.3.3 128804,128805 1yliA 153 20.30 d.38.1.1 123651 1j1yA 136 21.15 d.38.1.5 90776 2vlqB 134 22.15 1k2dB 189 23.11 b.1.1.2,d.19.1.1 84293,84294 1vpmA 169 24.16 d.38.1.1 113967 2ownA 262 25.51 1zj8A 566 25.66 1bh9B 89 26.12 a.22.1.3 16485 3bgeA 201 26.14 1i9bA 217 26.96 b.96.1.1 62084 2essA 248 27.87 d.38.1.8,d.38.1.8 132346,132347 1g5cA 170 27.90 c.53.2.1 60264 3bevB 99 28.02 1jk8B 190 28.39 b.1.1.2,d.19.1.1 63147,63148 1lfpA 249 28.69 e.39.1.1 73885 3cawA 330 29.11 2hfnA 153 29.72 2q2bA 179 29.92 2a6sA 84 30.39 d.298.1.1 126305 1sx5A 244 30.59 c.52.1.2 99023 2eb4A 267 31.79 1a79A 171 32.11 c.52.2.1,d.75.1.1 33340,39739 3b7kA 333 32.30 2ielA 138 35.42 1at0A 145 35.68 b.86.1.1 28374 1aopA 497 35.93 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2jssB 62 36.43 1j34B 123 36.74 d.169.1.1 84049 2id1A 130 37.75 2fujA 137 37.90 d.38.1.1 134175 1wmiA 90 39.66 d.298.1.2 121045 1mwpA 96 39.76 d.170.2.1 42453 1ieaB 228 40.12 b.1.1.2,d.19.1.1 21632,38206 1f9yA 158 41.19 d.58.30.1 83249 2guyA 478 42.61 b.71.1.1,c.1.8.1 135754,135755 2egjA 128 43.82 1n7hA 381 44.96 c.2.1.2 80250 1ea9C 583 45.27 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2ayhA 214 45.70 b.29.1.2 24172 2o1rA 81 47.30 2qx0A 159 50.78 2nacA 393 52.62 c.2.1.4,c.23.12.1 30088,31348 2uwaA 274 53.97 1ux2A 212 54.07 b.96.1.1 100132 2bshA 125 54.54 1upiA 225 54.57 b.82.1.1 99757 2pzhA 135 56.43 1bqcA 302 57.35 c.1.8.3 28831 2nujA 163 58.85 d.38.1.1 138608 1fusA 106 59.47 d.1.1.4 36050 1rtuA 114 59.73 d.1.1.4 36139 2i5iA 263 60.67 1tuc 63 60.92 2alaA 391 60.99 b.1.18.4,f.10.1.1 126973,126974 1c9kA 180 61.55 c.37.1.11 32363 2askA 113 62.41 1x8hA 228 62.89 d.157.1.1 114961 1c01A 76 62.91 b.11.1.5 23633 1r4yA 136 64.49 d.1.1.3 97056 1hdhA 536 64.83 c.76.1.2 65805 2cyeA 133 65.47 d.38.1.1 131021 1psuA 140 65.59 d.38.1.5 88285 2gf6A 135 65.82 d.38.1.1 135077 1vkwA 218 66.40 d.90.1.2 108695 1eyvA 156 66.92 a.79.1.1 18446 2vtwA 205 67.51 2bj0A 203 68.27 1pzsA 208 68.39 b.1.8.1 104397 3c7bA 417 69.65 2pm1A 30 69.72 1dysA 348 71.96 c.6.1.1 30669 1fngA 192 71.99 b.1.1.2,d.19.1.1 59904,59905 1kqzA 273 72.08 c.1.8.5 68844 1nvpD 108 72.17 a.32.1.1,b.56.1.1 92213,92214 2jrfA 184 72.80 1wd3A 482 74.24 b.29.1.21,b.42.8.1 109233,109234 1vkbA 161 74.35 d.269.1.1 108643 1npoA 95 74.36 b.9.1.1 23270 1vd6A 224 74.69 c.1.18.3 119991 2b3oA 532 75.72 2qjtA 352 76.17 2f0xA 148 77.95 d.38.1.5 132673 2iw1A 374 78.21 c.87.1.8 137738 2bsjA 133 80.38 2f41A 121 80.73 d.38.1.5 132904 1wzoA 246 81.56 1l9xA 315 81.62 c.23.16.1 73762 1sawA 225 82.82 d.177.1.1 112050 2z0qA 346 83.14 2h4uA 145 83.48 d.38.1.5 136082 1z54A 132 83.65 d.38.1.1 124450 2cy9A 140 83.86 d.38.1.5 131019 2oiwA 136 84.53 1s5uA 138 85.31 d.38.1.1 98573 2oauA 306 85.76 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1tn3A 137 87.85 d.169.1.1 42423 1eovA 487 89.70 b.40.4.1,d.104.1.1 25239,40760 3bbjA 272 89.78 2hykA 245 89.91