# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2nudC 35 4.424 1o1zA 234 4.463 c.1.18.3 86555 1y93A 159 4.583 d.92.1.11 122772 2oryA 346 4.587 1hdfA 102 5.488 b.11.1.1 23627 1vr8A 142 5.531 d.312.1.1 120445 2v1oA 151 6.741 2bmoA 447 7.087 b.33.1.2,d.129.3.3 128804,128805 2fxtA 192 7.644 2qmjA 870 9.364 1rdsA 105 10.15 d.1.1.4 36236 1zkiA 133 10.41 d.38.1.5 125199 2gvhA 288 11.22 d.38.1.1,d.38.1.1 135776,135777 1sv6A 269 11.86 d.177.1.1 106043 1ixlA 131 12.46 d.38.1.5 90717 3b7kA 333 12.85 3cjsA 60 13.74 2eb4A 267 14.44 1wxxA 382 14.55 b.122.1.9,c.66.1.51 121418,121419 2eisA 133 15.53 1uv6A 210 15.58 b.96.1.1 100030 1at0A 145 15.90 b.86.1.1 28374 1n7oA 721 17.05 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1yliA 153 17.09 d.38.1.1 123651 1eguA 731 17.65 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2vlqB 134 18.01 1qw9A 502 18.74 b.71.1.2,c.1.8.3 96466,96467 1a79A 171 19.12 c.52.2.1,d.75.1.1 33340,39739 1j34B 123 21.11 d.169.1.1 84049 1npoA 95 23.01 b.9.1.1 23270 3bgeA 201 23.70 1bh9B 89 23.72 a.22.1.3 16485 1p3cA 215 24.59 b.47.1.1 93996 3bjkA 153 25.00 2id1A 130 25.05 1g5cA 170 27.15 c.53.2.1 60264 1vmoA 163 27.36 b.77.1.1 27974 1n7hA 381 28.19 c.2.1.2 80250 1zmiA 29 28.79 2o1rA 81 29.94 2hfnA 153 30.77 1dfnA 30 33.41 g.9.1.1 44570 1wluA 136 35.02 d.38.1.5 121015 1vpmA 169 36.86 d.38.1.1 113967 1sx5A 244 37.92 c.52.1.2 99023 1dysA 348 38.13 c.6.1.1 30669 1j1yA 136 38.47 d.38.1.5 90776 2guyA 478 41.65 b.71.1.1,c.1.8.1 135754,135755 2pm1A 30 42.55 1pm4A 119 42.71 b.135.1.1 94891 1i9bA 217 45.12 b.96.1.1 62084 1kqzA 273 45.16 c.1.8.5 68844 1k2dB 189 45.31 b.1.1.2,d.19.1.1 84293,84294 2fujA 137 48.00 d.38.1.1 134175 2a6sA 84 49.05 d.298.1.1 126305 1jk8B 190 49.26 b.1.1.2,d.19.1.1 63147,63148 2nujA 163 52.09 d.38.1.1 138608 2q2bA 179 52.44 2oauA 306 52.99 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1x8hA 228 57.96 d.157.1.1 114961 1eg9A 449 58.18 b.33.1.2,d.129.3.3 24443,41322 2ayhA 214 59.84 b.29.1.2 24172 3bevB 99 60.06 1ux2A 212 60.42 b.96.1.1 100132 1bqcA 302 61.27 c.1.8.3 28831 2d49A 53 61.60 1f60B 94 62.02 d.58.12.1 39307 2uwaA 274 63.27 2ielA 138 64.63 2hykA 245 65.41 1jfxA 217 66.12 c.1.8.8 62943 2jssB 62 67.61 2agtA 319 68.37 2db7A 64 69.21 2ciuA 127 69.26 2pgbB 259 69.67 1s3aA 102 72.57 c.47.1.22 118847 1s68A 249 72.76 d.142.2.4 98591 2egjA 128 73.53 1cnv 299 74.60 1zj8A 566 75.89 2ownA 262 76.79 1wd3A 482 78.47 b.29.1.21,b.42.8.1 109233,109234 1ieaB 228 78.69 b.1.1.2,d.19.1.1 21632,38206 1wmiA 90 79.87 d.298.1.2 121045 2bj0A 203 80.30 2hhiA 204 82.14 1fusA 106 82.48 d.1.1.4 36050 1rovA 857 83.52 a.119.1.1,b.12.1.1 97674,97675 1qhoA 686 83.56 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1vd6A 224 84.69 c.1.18.3 119991 1aopA 497 86.48 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1bvqA 141 88.63 d.38.1.1 38542 3c66C 26 89.20