# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1o1zA 234 1.259 c.1.18.3 86555 1y93A 159 1.630 d.92.1.11 122772 1hdfA 102 1.819 b.11.1.1 23627 3bjkA 153 1.845 2v1oA 151 1.911 1wxxA 382 3.064 b.122.1.9,c.66.1.51 121418,121419 1ixlA 131 3.105 d.38.1.5 90717 2bmoA 447 3.189 b.33.1.2,d.129.3.3 128804,128805 3b7kA 333 3.403 2q2bA 179 3.532 1hdhA 536 3.769 c.76.1.2 65805 2nudC 35 3.884 2eisA 133 4.078 1yliA 153 4.643 d.38.1.1 123651 2agtA 319 4.847 1n7oA 721 4.919 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 3cjsA 60 5.333 1wluA 136 5.516 d.38.1.5 121015 2qmjA 870 5.710 1eguA 731 5.828 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1j1yA 136 6.186 d.38.1.5 90776 1zkiA 133 6.241 d.38.1.5 125199 1vr8A 142 6.367 d.312.1.1 120445 1wmiA 90 7.931 d.298.1.2 121045 2eb4A 267 7.969 1at0A 145 7.985 b.86.1.1 28374 2gvhA 288 8.534 d.38.1.1,d.38.1.1 135776,135777 2bgsA 344 8.778 1vpmA 169 9.047 d.38.1.1 113967 1qw9A 502 9.084 b.71.1.2,c.1.8.3 96466,96467 1fsuA 492 9.546 c.76.1.2 35032 1sv6A 269 9.633 d.177.1.1 106043 2fujA 137 9.882 d.38.1.1 134175 1zmiA 29 10.21 1npoA 95 10.43 b.9.1.1 23270 2nujA 163 10.49 d.38.1.1 138608 1bh9B 89 10.54 a.22.1.3 16485 1dfnA 30 10.75 g.9.1.1 44570 1sawA 225 12.71 d.177.1.1 112050 1vjyA 303 12.88 d.144.1.7 108633 1us0A 316 13.80 c.1.7.1 99850 2as0A 396 14.32 b.122.1.9,c.66.1.51 127227,127228 1s68A 249 14.42 d.142.2.4 98591 2egjA 128 14.72 2pm1A 30 15.23 1py5A 326 16.37 d.144.1.7 104389 1vmoA 163 16.69 b.77.1.1 27974 2fxtA 192 16.84 3bgeA 201 17.80 1upiA 225 17.85 b.82.1.1 99757 2cyeA 133 17.87 d.38.1.1 131021 2dfuA 264 18.38 1p3cA 215 18.66 b.47.1.1 93996 2prdA 174 21.04 b.40.5.1 25435 1yewA 382 21.88 2cy9A 140 21.89 d.38.1.5 131019 2pzhA 135 22.26 1rdsA 105 22.29 d.1.1.4 36236 2ownA 262 23.07 1uv6A 210 23.24 b.96.1.1 100030 1nkqA 259 24.25 d.177.1.1 103862 1psuA 140 24.37 d.38.1.5 88285 2f41A 121 25.91 d.38.1.5 132904 2bshA 125 25.98 2r3uA 211 26.37 1bvqA 141 26.44 d.38.1.1 38542 2ocsA 88 26.81 1iuhA 198 27.14 d.61.1.2 83711 1z54A 132 27.22 d.38.1.1 124450 1pm4A 119 27.53 b.135.1.1 94891 1c9kA 180 28.46 c.37.1.11 32363 2ozfA 92 28.55 1k6zA 141 28.58 d.198.1.1 68247 2oiwA 136 28.68 2a6sA 84 28.93 d.298.1.1 126305 2pgbB 259 28.98 1vizA 240 29.18 c.1.4.1 100784 1s5uA 138 29.68 d.38.1.1 98573 2f0xA 148 29.70 d.38.1.5 132673 1lfpA 249 30.16 e.39.1.1 73885 1tuc 63 30.20 2v90A 96 30.22 3cetA 334 30.53 2gf6A 135 30.61 d.38.1.1 135077 2egoA 96 30.86 2phcB 225 31.42 1jk4A 89 31.79 b.9.1.1 77130 1njkA 156 31.82 d.38.1.1 85818 1kqzA 273 31.91 c.1.8.5 68844 2hlyA 207 31.94 1a79A 171 32.10 c.52.2.1,d.75.1.1 33340,39739 2i33A 258 32.25 3cawA 330 32.27 2q3gA 89 32.43 2hboA 158 32.66 d.38.1.5 136319 1g5cA 170 33.05 c.53.2.1 60264 2essA 248 33.25 d.38.1.8,d.38.1.8 132346,132347 2hnuA 81 33.37 1r4yA 136 33.77 d.1.1.3 97056 1j34B 123 33.95 d.169.1.1 84049 2h4uA 145 34.15 d.38.1.5 136082 1cnv 299 34.37 1eg9A 449 34.74 b.33.1.2,d.129.3.3 24443,41322 2jnsA 90 35.22 1eyvA 156 35.51 a.79.1.1 18446 3ck1A 150 36.01 2o1rA 81 36.62 2ov9A 216 36.97 2he4A 90 37.44 2o5uA 148 37.81 1ads 315 37.90 2jrfA 184 38.37 1jsmA 325 38.50 b.19.1.2 63264 1jk8B 190 38.82 b.1.1.2,d.19.1.1 63147,63148 1i9bA 217 39.35 b.96.1.1 62084 2id1A 130 39.61 2bhoA 130 40.01 1sx5A 244 40.32 c.52.1.2 99023 2vlqB 134 41.06 1a9wE 146 41.18 a.1.1.2 15551 1lo7A 141 41.36 d.38.1.1 74144 2pktA 91 42.72 1ppoA 216 43.37 d.3.1.1 37020 1h6lA 353 43.38 b.68.3.1 60687 2oqoA 200 43.53 1f60B 94 43.85 d.58.12.1 39307 2fs2A 151 44.14 d.38.1.5 134003 1aukA 489 44.22 c.76.1.2 35030 2hx5A 152 44.50 d.38.1.1 136837 2ozlB 341 44.92 c.36.1.7,c.48.1.2 139447,139448 2ciuA 127 45.39 2hfnA 153 45.63 2oryA 346 46.02 2e1bA 216 46.20 2pooA 355 46.20 b.68.3.1 27626 1wzoA 246 46.20 2hykA 245 46.56 1pzsA 208 46.61 b.1.8.1 104397 2oaiA 94 51.38 1ktjA 129 51.56 b.1.18.7 72974 1bdo 80 51.61 2av9A 147 53.13 d.38.1.1 127365 1ux2A 212 54.03 b.96.1.1 100132 1aopA 497 54.47 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2ns9A 157 54.50 1umzA 278 54.60 b.29.1.2 99639 1a00B 146 55.33 a.1.1.2 15469 1wc9A 169 55.36 d.278.1.2 114507 2prxA 160 56.07 2ovxA 159 56.26 d.92.1.11 139388 1utiA 58 57.22 b.34.2.1 99962 1a8h 500 57.45 2uwaA 274 57.62 1euvA 221 58.96 d.3.1.7 37133 1ieaB 228 59.68 b.1.1.2,d.19.1.1 21632,38206 1w70A 60 60.04 1jfxA 217 60.15 c.1.8.8 62943 2iw1A 374 60.24 c.87.1.8 137738 1fngA 192 61.55 b.1.1.2,d.19.1.1 59904,59905 1tn3A 137 62.47 d.169.1.1 42423 1e8pA 46 63.08 g.55.1.1 59385 1oi6A 205 63.44 b.82.1.1 103940 2fcoA 200 63.96 2jssB 62 64.53 1a01B 146 64.61 a.1.1.2 15448 2hhjA 267 64.64 c.60.1.1 136497 1oebA 62 64.80 b.34.2.1 86909 2rjbA 455 64.89 1kcqA 104 65.93 d.109.1.1 68449 3b5eA 223 68.16 2igtA 332 69.35 c.66.1.51 137401 1ta3A 274 69.44 c.1.8.5 106731 2bdeA 470 69.67 c.108.1.23 128335 2gefA 217 69.81 2ielA 138 69.86 2qx0A 159 70.04 1i76A 163 70.48 d.92.1.11 61877 2bj0A 203 70.63 3bbjA 272 70.71 2dx0A 138 70.73 1gd8A 118 71.51 d.188.1.1 60445 1bqcA 302 72.64 c.1.8.3 28831 1co6A 107 73.89 a.3.1.1 15894 2plsA 86 75.15 2pk3A 321 75.24 1r6jA 82 75.38 b.36.1.1 97151 2ov6A 101 75.58 1uxzA 131 76.17 b.18.1.10 100170 1t0gA 109 76.33 d.120.1.2 99063 1squA 155 77.04 d.252.1.1 98971 3citA 160 77.33 1n7hA 381 77.61 c.2.1.2 80250 2ggrA 76 77.67 2bxxA 134 78.83 b.148.1.1 129446 1bupA 386 78.95 c.55.1.1,c.55.1.1 33377,33378 2ak5A 64 79.12 2rdeA 251 79.17 2ayhA 214 80.70 b.29.1.2 24172 2b78A 385 81.04 b.122.1.9,c.66.1.51 128025,128026 1jdlA 121 81.12 a.3.1.1 66557 2c0zA 216 81.24 b.82.1.1 129615 1xzzA 246 81.26 2j13A 247 81.47 c.6.2.3 137934 2fokA 579 81.99 a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 2hljA 157 82.07 d.38.1.1 136570 2i5iA 263 82.38 1k2dB 189 82.57 b.1.1.2,d.19.1.1 84293,84294 1aqzA 149 82.63 d.1.1.3 36238 2qjlA 99 82.74 1zj8A 566 83.34 1fusA 106 83.35 d.1.1.4 36050 2a28A 54 83.89 1vkbA 161 84.11 d.269.1.1 108643 1uw6A 211 84.95 b.96.1.1 100079 1vd6A 224 86.17 c.1.18.3 119991 2pliA 91 86.26 2vtwA 205 86.88 1wehA 171 86.97 c.129.1.1 114551 1at0 145 87.99 1ignA 246 88.11 a.4.1.6,a.4.1.6 16048,16049 1zx6A 58 88.29 1l9xA 315 88.30 c.23.16.1 73762 1gvkB 240 88.31 b.47.1.2 70610 1jlzA 23 88.77 g.3.7.2 66869 2bsjA 133 88.78 1vqzA 341 88.83 d.224.1.3,d.104.1.3 120426,120427 1f9yA 158 88.96 d.58.30.1 83249 1qnjA 240 89.46 b.47.1.2 26238