# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fxtA 192 4.437 2oryA 346 4.735 1o1zA 234 4.752 c.1.18.3 86555 2nudC 35 4.816 1y93A 159 5.754 d.92.1.11 122772 3cjsA 60 7.286 1hdfA 102 7.993 b.11.1.1 23627 1rdsA 105 8.388 d.1.1.4 36236 1bh9B 89 9.076 a.22.1.3 16485 1vr8A 142 9.601 d.312.1.1 120445 1eguA 731 11.69 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2gvhA 288 12.01 d.38.1.1,d.38.1.1 135776,135777 3bjkA 153 12.26 1n7oA 721 12.69 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1qw9A 502 12.71 b.71.1.2,c.1.8.3 96466,96467 1wxxA 382 13.90 b.122.1.9,c.66.1.51 121418,121419 1a79A 171 13.90 c.52.2.1,d.75.1.1 33340,39739 1g5cA 170 16.23 c.53.2.1 60264 2qmjA 870 18.13 1bqcA 302 18.16 c.1.8.3 28831 1zmiA 29 19.31 1ixlA 131 19.54 d.38.1.5 90717 1yliA 153 19.63 d.38.1.1 123651 2bmoA 447 19.67 b.33.1.2,d.129.3.3 128804,128805 1dfnA 30 19.86 g.9.1.1 44570 2jssB 62 20.78 1n7hA 381 22.40 c.2.1.2 80250 1j34B 123 22.53 d.169.1.1 84049 2v1oA 151 22.59 1uv6A 210 22.96 b.96.1.1 100030 2ayhA 214 24.31 b.29.1.2 24172 2eisA 133 24.65 2hfnA 153 24.88 1at0A 145 25.08 b.86.1.1 28374 1vmoA 163 25.72 b.77.1.1 27974 3bgeA 201 25.97 3b7kA 333 27.10 1zj8A 566 27.59 2essA 248 28.03 d.38.1.8,d.38.1.8 132346,132347 2ownA 262 29.35 1p3cA 215 29.36 b.47.1.1 93996 1zkiA 133 30.04 d.38.1.5 125199 1pm4A 119 30.45 b.135.1.1 94891 1vpmA 169 31.09 d.38.1.1 113967 1kqzA 273 31.19 c.1.8.5 68844 1i9bA 217 32.41 b.96.1.1 62084 3cawA 330 32.41 1sx5A 244 33.17 c.52.1.2 99023 1rtuA 114 35.29 d.1.1.4 36139 1lfpA 249 35.91 e.39.1.1 73885 2ielA 138 37.63 2uwaA 274 40.43 1tuc 63 41.52 2id1A 130 41.70 1jk8B 190 43.22 b.1.1.2,d.19.1.1 63147,63148 1k2dB 189 44.61 b.1.1.2,d.19.1.1 84293,84294 1dysA 348 45.65 c.6.1.1 30669 1jqoA 970 45.92 c.1.12.3 77160 1sv6A 269 46.00 d.177.1.1 106043 3bevB 99 46.40 1npoA 95 46.59 b.9.1.1 23270 1hdhA 536 47.08 c.76.1.2 65805 2vlqB 134 50.15 1cnv 299 50.53 3bbjA 272 53.08 1aopA 497 53.14 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1ieaB 228 53.44 b.1.1.2,d.19.1.1 21632,38206 2db7A 64 54.84 1fusA 106 55.58 d.1.1.4 36050 1ea9C 583 55.77 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2ac1A 541 57.71 2egjA 128 58.25 2bshA 125 60.28 1wluA 136 61.97 d.38.1.5 121015 2hykA 245 63.03 1f60B 94 63.45 d.58.12.1 39307 2a6sA 84 65.53 d.298.1.1 126305 1ujsA 88 66.40 a.14.1.1 99467 2o1rA 81 67.14 2hlyA 207 68.54 1ux2A 212 68.88 b.96.1.1 100132 2etjA 250 70.19 c.55.3.1 132360 1j1yA 136 70.86 d.38.1.5 90776 3c7bA 417 71.46 2d49A 53 72.07 2guyA 478 72.46 b.71.1.1,c.1.8.1 135754,135755 2r3uA 211 73.95 2pzhA 135 77.03 2dx0A 138 77.50 2bj0A 203 77.74 2fujA 137 77.79 d.38.1.1 134175 1upiA 225 81.61 b.82.1.1 99757 2q2bA 179 81.72 1vd6A 224 82.01 c.1.18.3 119991 2o5uA 148 83.58 2cyeA 133 84.02 d.38.1.1 131021 2eb4A 267 85.50 1c9kA 180 85.80 c.37.1.11 32363 1i76A 163 86.37 d.92.1.11 61877 1xvqA 175 86.96 c.47.1.10 116094 2gt1A 326 87.28 1pzsA 208 87.39 b.1.8.1 104397 3c66C 26 87.86 2nujA 163 88.01 d.38.1.1 138608 1wmiA 90 88.69 d.298.1.2 121045 2oiwA 136 88.71 1h6lA 353 88.82 b.68.3.1 60687 1i07A 60 89.76 b.34.2.1 61477