# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oryA 346 3.668 1o1zA 234 4.205 c.1.18.3 86555 1hdfA 102 4.987 b.11.1.1 23627 2v1oA 151 5.905 2fxtA 192 5.949 2nudC 35 6.054 1y93A 159 6.423 d.92.1.11 122772 1vr8A 142 6.696 d.312.1.1 120445 2qmjA 870 6.868 1wxxA 382 7.942 b.122.1.9,c.66.1.51 121418,121419 2gvhA 288 8.065 d.38.1.1,d.38.1.1 135776,135777 3cjsA 60 8.666 3bjkA 153 9.241 1rdsA 105 11.12 d.1.1.4 36236 1yliA 153 11.42 d.38.1.1 123651 1qw9A 502 11.58 b.71.1.2,c.1.8.3 96466,96467 3b7kA 333 11.71 1n7hA 381 12.62 c.2.1.2 80250 1zkiA 133 13.21 d.38.1.5 125199 1eguA 731 13.44 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1a79A 171 14.08 c.52.2.1,d.75.1.1 33340,39739 1n7oA 721 14.33 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2eisA 133 15.21 1g5cA 170 15.23 c.53.2.1 60264 2bmoA 447 15.75 b.33.1.2,d.129.3.3 128804,128805 1ixlA 131 17.16 d.38.1.5 90717 1hdhA 536 18.35 c.76.1.2 65805 1vpmA 169 20.28 d.38.1.1 113967 1uv6A 210 20.70 b.96.1.1 100030 1at0A 145 20.76 b.86.1.1 28374 2o1rA 81 21.98 1j34B 123 22.18 d.169.1.1 84049 1sv6A 269 22.36 d.177.1.1 106043 1npoA 95 23.55 b.9.1.1 23270 2hfnA 153 23.74 1vmoA 163 24.25 b.77.1.1 27974 1p3cA 215 27.29 b.47.1.1 93996 2eb4A 267 28.01 2jssB 62 29.25 1k2dB 189 29.27 b.1.1.2,d.19.1.1 84293,84294 2ielA 138 29.72 1zmiA 29 31.24 1bqcA 302 31.68 c.1.8.3 28831 1pm4A 119 32.00 b.135.1.1 94891 2pgbB 259 34.01 1sx5A 244 34.04 c.52.1.2 99023 1bh9B 89 34.25 a.22.1.3 16485 1dysA 348 34.28 c.6.1.1 30669 3bgeA 201 34.72 2essA 248 34.79 d.38.1.8,d.38.1.8 132346,132347 1dfnA 30 35.66 g.9.1.1 44570 2egjA 128 35.73 1jk8B 190 35.99 b.1.1.2,d.19.1.1 63147,63148 2ayhA 214 36.28 b.29.1.2 24172 1ujsA 88 36.48 a.14.1.1 99467 1zj8A 566 37.92 1jqoA 970 38.14 c.1.12.3 77160 2ownA 262 38.21 2guyA 478 39.36 b.71.1.1,c.1.8.1 135754,135755 2nujA 163 39.61 d.38.1.1 138608 1wluA 136 39.77 d.38.1.5 121015 1kqzA 273 39.78 c.1.8.5 68844 1fsuA 492 40.00 c.76.1.2 35032 2id1A 130 40.62 1f60B 94 40.70 d.58.12.1 39307 2q2bA 179 44.65 3bevB 99 45.27 1i9bA 217 45.34 b.96.1.1 62084 1wmiA 90 45.44 d.298.1.2 121045 3cawA 330 45.53 2pzhA 135 49.68 1j1yA 136 49.72 d.38.1.5 90776 1ieaB 228 50.43 b.1.1.2,d.19.1.1 21632,38206 1lfpA 249 50.54 e.39.1.1 73885 1ea9C 583 50.61 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1cnv 299 52.13 1z54A 132 52.58 d.38.1.1 124450 2o5uA 148 54.28 2vlqB 134 54.36 2fujA 137 54.85 d.38.1.1 134175 2a6sA 84 55.16 d.298.1.1 126305 2ac1A 541 57.19 2pliA 91 57.75 2d49A 53 58.08 2oaiA 94 59.56 1a8h 500 60.55 2agtA 319 61.35 1s5uA 138 62.27 d.38.1.1 98573 2uwaA 274 62.64 1rtuA 114 62.98 d.1.1.4 36139 2cyeA 133 63.20 d.38.1.1 131021 1fusA 106 64.83 d.1.1.4 36050 1bvqA 141 64.95 d.38.1.1 38542 2hlyA 207 66.15 2bshA 125 67.68 1ux2A 212 69.87 b.96.1.1 100132 1wd3A 482 71.61 b.29.1.21,b.42.8.1 109233,109234 1aopA 497 73.41 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2xatA 212 73.68 b.81.1.3 28058 1nvpD 108 74.40 a.32.1.1,b.56.1.1 92213,92214 2oiwA 136 74.81 2hykA 245 74.88 2r3uA 211 75.26 2hnuA 81 75.54 1xvqA 175 77.20 c.47.1.10 116094 1c3wA 222 77.30 f.13.1.1 43405 1mkiA 330 77.42 e.3.1.2 84994 1l9xA 315 78.86 c.23.16.1 73762 2gf6A 135 80.66 d.38.1.1 135077 1tn3A 137 81.16 d.169.1.1 42423 2av9A 147 83.63 d.38.1.1 127365 3c66C 26 84.40 2oauA 306 84.99 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1c9kA 180 85.02 c.37.1.11 32363 2p13A 90 85.61 2f0xA 148 86.68 d.38.1.5 132673 1azo 232 86.99 1lo7A 141 88.28 d.38.1.1 74144