# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oryA 346 4.107 2v1oA 151 5.039 2fxtA 192 5.045 1hdfA 102 5.046 b.11.1.1 23627 1o1zA 234 5.914 c.1.18.3 86555 1y93A 159 6.238 d.92.1.11 122772 2nudC 35 6.740 1wxxA 382 7.451 b.122.1.9,c.66.1.51 121418,121419 1vr8A 142 7.691 d.312.1.1 120445 3b7kA 333 8.573 2qmjA 870 8.952 2gvhA 288 9.018 d.38.1.1,d.38.1.1 135776,135777 3bjkA 153 9.813 1rdsA 105 11.11 d.1.1.4 36236 3cjsA 60 11.61 1zkiA 133 11.72 d.38.1.5 125199 1n7hA 381 12.20 c.2.1.2 80250 1yliA 153 14.37 d.38.1.1 123651 2eisA 133 15.94 1a79A 171 16.18 c.52.2.1,d.75.1.1 33340,39739 1sv6A 269 16.54 d.177.1.1 106043 1hdhA 536 16.64 c.76.1.2 65805 1g5cA 170 16.85 c.53.2.1 60264 1eguA 731 17.44 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1ixlA 131 17.72 d.38.1.5 90717 1n7oA 721 17.87 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1qw9A 502 17.90 b.71.1.2,c.1.8.3 96466,96467 2bmoA 447 18.24 b.33.1.2,d.129.3.3 128804,128805 1j34B 123 19.01 d.169.1.1 84049 2hfnA 153 20.43 1npoA 95 20.93 b.9.1.1 23270 1uv6A 210 21.25 b.96.1.1 100030 1k2dB 189 22.41 b.1.1.2,d.19.1.1 84293,84294 1vpmA 169 22.66 d.38.1.1 113967 1vmoA 163 25.90 b.77.1.1 27974 2eb4A 267 26.80 2jssB 62 27.41 2o1rA 81 27.86 2pgbB 259 28.43 1jk8B 190 28.44 b.1.1.2,d.19.1.1 63147,63148 1p3cA 215 30.21 b.47.1.1 93996 1pm4A 119 30.32 b.135.1.1 94891 1dysA 348 32.26 c.6.1.1 30669 2vlqB 134 33.20 1at0A 145 33.41 b.86.1.1 28374 1zmiA 29 33.47 3bgeA 201 34.51 1wluA 136 34.89 d.38.1.5 121015 1dfnA 30 35.52 g.9.1.1 44570 1ujsA 88 36.41 a.14.1.1 99467 2egjA 128 38.50 1kqzA 273 38.86 c.1.8.5 68844 1ea9C 583 40.14 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 3bevB 99 40.29 1wmiA 90 40.36 d.298.1.2 121045 1f60B 94 40.65 d.58.12.1 39307 1sx5A 244 41.36 c.52.1.2 99023 2ielA 138 41.73 2q2bA 179 41.76 1i9bA 217 42.01 b.96.1.1 62084 2id1A 130 43.35 1j1yA 136 43.87 d.38.1.5 90776 1ieaB 228 44.09 b.1.1.2,d.19.1.1 21632,38206 2nujA 163 44.13 d.38.1.1 138608 2ayhA 214 44.25 b.29.1.2 24172 2ownA 262 44.33 1a8h 500 44.59 1cnv 299 45.80 1bh9B 89 46.00 a.22.1.3 16485 2guyA 478 48.40 b.71.1.1,c.1.8.1 135754,135755 2pzhA 135 49.68 2essA 248 50.21 d.38.1.8,d.38.1.8 132346,132347 2o5uA 148 51.26 1s5uA 138 53.26 d.38.1.1 98573 1z54A 132 53.79 d.38.1.1 124450 2d49A 53 54.05 1bqcA 302 54.08 c.1.8.3 28831 1fsuA 492 55.31 c.76.1.2 35032 2ac1A 541 56.16 2fujA 137 57.37 d.38.1.1 134175 1jqoA 970 59.20 c.1.12.3 77160 2uwaA 274 59.30 2oiwA 136 62.77 2hnuA 81 63.08 2ozlB 341 63.47 c.36.1.7,c.48.1.2 139447,139448 1wd3A 482 64.08 b.29.1.21,b.42.8.1 109233,109234 1lfpA 249 64.50 e.39.1.1 73885 2cyeA 133 67.18 d.38.1.1 131021 2a6sA 84 67.21 d.298.1.1 126305 1fjgK 129 68.52 c.55.4.1 33733 1ux2A 212 69.17 b.96.1.1 100132 2agtA 319 69.79 1zj8A 566 70.04 3cawA 330 70.35 1fusA 106 71.13 d.1.1.4 36050 2oaiA 94 74.71 1bvqA 141 75.12 d.38.1.1 38542 1rtuA 114 76.10 d.1.1.4 36139 2av9A 147 77.71 d.38.1.1 127365 1x8hA 228 78.98 d.157.1.1 114961 2bshA 125 80.28 2f0xA 148 83.98 d.38.1.5 132673 2oafA 151 84.79 2gf6A 135 85.38 d.38.1.1 135077 2hykA 245 86.27 2hlyA 207 86.61 2bj0A 203 87.46 1c3wA 222 87.49 f.13.1.1 43405