# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1euvA 221 0.9649 d.3.1.7 37133 2qmjA 870 2.023 2oryA 346 2.335 2fxtA 192 3.768 1hdfA 102 5.256 b.11.1.1 23627 2jrnA 163 5.566 1jsmA 325 5.999 b.19.1.2 63264 1o1zA 234 7.063 c.1.18.3 86555 1ujsA 88 8.267 a.14.1.1 99467 1bh9B 89 8.639 a.22.1.3 16485 1vr8A 142 10.88 d.312.1.1 120445 1g5cA 170 11.33 c.53.2.1 60264 1kqzA 273 11.37 c.1.8.5 68844 1rdsA 105 13.05 d.1.1.4 36236 2db7A 64 16.34 2jraA 67 16.84 1aopA 497 16.97 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 3cjsA 60 17.57 1wxxA 382 18.85 b.122.1.9,c.66.1.51 121418,121419 2nudC 35 19.12 2dbsA 90 19.66 2r3uA 211 21.36 2cpcA 113 22.02 1j34B 123 22.06 d.169.1.1 84049 1eguA 731 22.12 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1mvfD 82 22.23 b.129.1.1 85143 2hfnA 153 22.49 1n7oA 721 23.58 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1b9oA 123 23.74 d.2.1.2 36597 2ahnA 222 23.76 1y93A 159 23.89 d.92.1.11 122772 2v1oA 151 23.95 1hdhA 536 24.23 c.76.1.2 65805 1zj8A 566 24.36 1r4yA 136 24.93 d.1.1.3 97056 2guyA 478 25.83 b.71.1.1,c.1.8.1 135754,135755 2bmoA 447 25.88 b.33.1.2,d.129.3.3 128804,128805 2b3oA 532 25.95 3bgeA 201 29.23 1uv6A 210 31.51 b.96.1.1 100030 1wmiA 90 32.17 d.298.1.2 121045 2r9gA 204 33.09 2ihcA 124 33.71 2xatA 212 37.13 b.81.1.3 28058 1vd6A 224 39.01 c.1.18.3 119991 1ta3A 274 39.23 c.1.8.5 106731 1sx5A 244 41.15 c.52.1.2 99023 1p3cA 215 41.84 b.47.1.1 93996 1u04A 771 42.53 b.34.14.1,c.55.3.10 107539,107540 2fwvA 226 43.28 1pzwA 80 44.19 g.39.1.10 95483 2ownA 262 45.35 2essA 248 45.73 d.38.1.8,d.38.1.8 132346,132347 1bt3A 345 47.54 a.86.1.2 18507 2d49A 53 48.34 1vmoA 163 48.81 b.77.1.1 27974 2nxcA 254 49.34 c.66.1.39 138739 1xm0A 147 50.19 b.88.1.3 122140 1a79A 171 51.66 c.52.2.1,d.75.1.1 33340,39739 1j75A 67 52.46 a.4.5.19 62673 2uwaA 274 54.77 2z3yA 662 54.95 1fkqA 124 55.36 d.2.1.2 36601 1i9bA 217 56.63 b.96.1.1 62084 1jqoA 970 57.38 c.1.12.3 77160 1h8eI 50 58.37 a.137.8.1 60758 1rzhH 260 58.85 b.41.1.1,f.23.10.1 98162,98163 1jk8B 190 64.06 b.1.1.2,d.19.1.1 63147,63148 1zldA 120 66.28 2btlA 134 66.83 b.148.1.1 129154 1vjjA 692 69.83 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1nslA 184 70.82 d.108.1.1 86137 1t8qA 336 72.97 c.1.18.3 106669 1yr2A 741 74.44 2eo2A 71 75.28 1p77A 272 75.71 c.2.1.7,c.58.1.5 94214,94215 2ayhA 214 75.77 b.29.1.2 24172 1lh0A 213 77.10 c.61.1.1 73896 1ea9C 583 78.25 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1zkiA 133 78.37 d.38.1.5 125199 1g7fA 298 79.12 c.45.1.2 60330 2hlyA 207 79.27 1vm8A 534 81.33 c.68.1.5 113670 2a9uA 144 81.40 a.118.23.1 126450 1p32A 209 81.53 d.25.1.1 38379 1pm4A 119 82.33 b.135.1.1 94891 1b33N 67 83.65 d.30.1.1 38459 1tpfA 250 84.79 c.1.1.1 28467 1nnvA 110 85.56 d.17.7.1 92012 1ieaB 228 85.95 b.1.1.2,d.19.1.1 21632,38206 1kv5A 250 86.01 c.1.1.1 73052 2jdiI 50 86.74 2askA 113 87.81 1i45A 248 88.78 c.1.1.1 61665 3bbjA 272 88.89