# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1o1zA 234 3.135 c.1.18.3 86555 2fxtA 192 3.174 1hdfA 102 4.083 b.11.1.1 23627 2oryA 346 5.113 2nudC 35 5.263 3cjsA 60 5.346 1y93A 159 6.085 d.92.1.11 122772 2v1oA 151 6.903 2gvhA 288 8.746 d.38.1.1,d.38.1.1 135776,135777 1rdsA 105 9.018 d.1.1.4 36236 1vr8A 142 9.035 d.312.1.1 120445 1wxxA 382 10.48 b.122.1.9,c.66.1.51 121418,121419 1dfnA 30 10.93 g.9.1.1 44570 1a79A 171 11.27 c.52.2.1,d.75.1.1 33340,39739 1zmiA 29 12.02 3b7kA 333 13.94 3bjkA 153 14.57 1sv6A 269 15.03 d.177.1.1 106043 1p3cA 215 15.14 b.47.1.1 93996 1hdhA 536 15.26 c.76.1.2 65805 2ielA 138 15.41 1ixlA 131 16.68 d.38.1.5 90717 1qw9A 502 17.48 b.71.1.2,c.1.8.3 96466,96467 1j34B 123 18.50 d.169.1.1 84049 1uv6A 210 18.51 b.96.1.1 100030 2hfnA 153 18.55 2bmoA 447 18.62 b.33.1.2,d.129.3.3 128804,128805 1n7oA 721 18.82 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2eisA 133 19.16 1ea9C 583 19.84 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1yliA 153 20.22 d.38.1.1 123651 1g5cA 170 20.25 c.53.2.1 60264 1pm4A 119 20.70 b.135.1.1 94891 2qmjA 870 21.31 1eguA 731 21.82 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2eb4A 267 22.44 1cnv 299 23.78 1jqoA 970 25.20 c.1.12.3 77160 1yewA 382 25.29 1vpmA 169 26.01 d.38.1.1 113967 1bqcA 302 26.73 c.1.8.3 28831 2vlqB 134 26.74 3bgeA 201 26.85 2essA 248 27.35 d.38.1.8,d.38.1.8 132346,132347 1vmoA 163 27.55 b.77.1.1 27974 1a8h 500 27.56 1bh9B 89 27.74 a.22.1.3 16485 2agtA 319 29.22 1zkiA 133 29.63 d.38.1.5 125199 1at0A 145 30.99 b.86.1.1 28374 2ayhA 214 32.07 b.29.1.2 24172 2jssB 62 33.81 1ujsA 88 34.17 a.14.1.1 99467 2pgbB 259 34.20 2q2bA 179 37.48 1i9bA 217 38.66 b.96.1.1 62084 1dysA 348 39.93 c.6.1.1 30669 2hlyA 207 41.70 2d49A 53 43.43 2o1rA 81 43.63 1kqzA 273 44.40 c.1.8.5 68844 2i33A 258 44.89 1aopA 497 45.56 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1l9xA 315 47.29 c.23.16.1 73762 1ux2A 212 47.48 b.96.1.1 100132 1s68A 249 47.70 d.142.2.4 98591 1k2dB 189 48.73 b.1.1.2,d.19.1.1 84293,84294 2ownA 262 49.09 2uwaA 274 51.01 1jk8B 190 51.53 b.1.1.2,d.19.1.1 63147,63148 2jnsA 90 51.62 1zj8A 566 53.04 3bbjA 272 55.48 1npoA 95 55.77 b.9.1.1 23270 1fsuA 492 55.87 c.76.1.2 35032 2guyA 478 56.18 b.71.1.1,c.1.8.1 135754,135755 1wmiA 90 58.92 d.298.1.2 121045 2r3uA 211 59.39 3bevB 99 61.28 1vd6A 224 61.45 c.1.18.3 119991 1wd3A 482 62.81 b.29.1.21,b.42.8.1 109233,109234 1eyvA 156 63.36 a.79.1.1 18446 1t0gA 109 63.92 d.120.1.2 99063 2id1A 130 64.33 2db7A 64 65.69 2hykA 245 66.73 1f60B 94 66.77 d.58.12.1 39307 1tuc 63 67.89 1lfpA 249 68.20 e.39.1.1 73885 1sx5A 244 69.13 c.52.1.2 99023 2f2hA 773 69.29 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1ieaB 228 69.37 b.1.1.2,d.19.1.1 21632,38206 2bj0A 203 69.58 2j13A 247 70.17 c.6.2.3 137934 2oauA 306 72.23 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 2a6sA 84 72.93 d.298.1.1 126305 1c3wA 222 72.98 f.13.1.1 43405 2cvhA 220 73.65 2bshA 125 74.89 2xatA 212 75.23 b.81.1.3 28058 1mo0A 275 78.06 c.1.1.1 79329 1rtuA 114 78.81 d.1.1.4 36139 1n8yC 608 81.35 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80314,80315,80316,80317 1n7hA 381 81.60 c.2.1.2 80250 2hnuA 81 81.76 1jfxA 217 82.71 c.1.8.8 62943 1ej6B 1275 84.72 i.7.1.1 45968 1vdiA 52 84.73 j.22.1.1 119992 2egjA 128 85.46 2jrnA 163 85.75 1qhoA 686 86.00 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2fcoA 200 86.63 1m0kA 262 86.75 f.13.1.1 78344 1sawA 225 86.86 d.177.1.1 112050 2gt1A 326 87.15 1tn3A 137 87.23 d.169.1.1 42423 1h6lA 353 87.53 b.68.3.1 60687 3c66C 26 88.66 2f41A 121 89.98 d.38.1.5 132904