# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ea9C 583 0.1642 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1edg 380 5.278 1vrbA 342 5.945 b.82.2.11 120450 1p3cA 215 6.050 b.47.1.1 93996 1w2fA 276 8.059 d.143.1.3 109125 1wd3A 482 8.206 b.29.1.21,b.42.8.1 109233,109234 1mp4A 292 8.876 c.68.1.6 79376 1ysqA 193 10.63 1k2yX 463 13.09 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1dfaA 454 14.07 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 2o0yA 260 15.04 2bg9E 370 15.27 1uv6A 210 15.69 b.96.1.1 100030 1hy7A 173 18.17 d.92.1.11 65957 2qvjA 421 19.33 1ym0A 238 19.70 2mtaC 147 21.92 a.3.1.1 15908 1t0gA 109 22.08 d.120.1.2 99063 2fgeA 995 22.52 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1gpuA 680 22.63 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 2biwA 490 24.04 2j8mA 172 25.53 1i78A 297 27.75 f.4.4.1 66046 2fxtA 192 28.26 2h88A 621 28.58 1rdsA 105 28.81 d.1.1.4 36236 1hzfA 367 29.34 a.102.4.4 76731 2nudC 35 29.59 2p51A 333 29.76 2qalC 232 29.76 1qs0A 407 32.47 c.36.1.11 31829 1rpnA 335 33.39 c.2.1.2 97708 1k0rA 366 33.59 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1zdsA 336 33.97 b.6.1.3,b.6.1.3 124952,124953 2nq5A 755 34.35 2htdA 140 34.56 1q7fA 286 38.10 b.68.9.1 96036 2q40A 367 39.02 e.50.1.1 139814 1yp2A 451 39.03 b.81.1.4,c.68.1.6 123798,123799 1ef1A 294 43.01 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 2asbA 251 43.96 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 2cmtA 172 44.31 2cy8A 453 44.60 2e3dA 302 44.80 1i9bA 217 45.52 b.96.1.1 62084 1q25A 432 46.09 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 2a40B 260 46.39 d.151.1.1 126139 1s1dA 331 46.83 b.67.3.1 98344 2gvhA 288 47.22 d.38.1.1,d.38.1.1 135776,135777 1bf6A 291 47.36 c.1.9.3 29065 2j13A 247 47.52 c.6.2.3 137934 2avwA 311 49.07 1vyfA 135 49.57 b.60.1.2 108902 2c4xA 260 50.60 2d1eA 248 51.96 1rloA 271 53.25 c.108.1.10 111864 1ixlA 131 54.14 d.38.1.5 90717 1ex0A 731 55.77 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2e58A 308 56.45 1ohvA 472 58.92 c.67.1.4 93031 2etjA 250 60.49 c.55.3.1 132360 1tf1A 198 61.71 d.110.2.2 106826 1dysA 348 64.64 c.6.1.1 30669 1rtuA 114 65.13 d.1.1.4 36139 2d4xA 248 69.88 1vmoA 163 70.84 b.77.1.1 27974 1io2A 213 71.21 c.55.3.1 62612 2v0uA 146 71.69 1y93A 159 72.12 d.92.1.11 122772 2gicA 422 73.07 a.260.1.1 135227 2p3rA 510 73.19 c.55.1.4,c.55.1.4 139471,139472 3c7bA 417 74.69 1t44G 147 75.12 d.109.1.1 106395 1ux2A 212 75.59 b.96.1.1 100132 2q8xA 331 77.25 2gy9C 206 79.53 2rmcA 182 81.83 b.62.1.1 27491 2qf3A 243 82.02 1khbA 625 83.73 c.91.1.1,c.109.1.1 68606,68607 1r13A 148 84.89 d.169.1.1,h.1.1.1 96782,96783 1yu1A 381 86.76 b.163.1.1,d.169.1.8 124027,124028 2p8iA 117 86.83 d.58.55.1 139522 1hbnC 248 87.11 d.58.31.1 60902 2e3jA 356 87.71 2bynA 227 88.66 1hnjA 317 89.72 c.95.1.2,c.95.1.2 35969,35970