# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fxtA	192	3.942		
2oryA	346	3.969		
1hdfA	102	4.356	b.11.1.1	23627
1o1zA	234	4.611	c.1.18.3	86555
2v1oA	151	4.878		
2nudC	35	5.031		
1vr8A	142	7.333	d.312.1.1	120445
1y93A	159	7.677	d.92.1.11	122772
2gvhA	288	7.714	d.38.1.1,d.38.1.1	135776,135777
2qmjA	870	9.947		
1wxxA	382	9.99	b.122.1.9,c.66.1.51	121418,121419
1p3cA	215	10.55	b.47.1.1	93996
1rdsA	105	10.97	d.1.1.4	36236
1a79A	171	12.21	c.52.2.1,d.75.1.1	33340,39739
3b7kA	333	12.54		
2bmoA	447	13.72	b.33.1.2,d.129.3.3	128804,128805
3bjkA	153	14.60		
2ielA	138	14.66		
1qw9A	502	15.04	b.71.1.2,c.1.8.3	96466,96467
1n7oA	721	15.81	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
3cjsA	60	16.18		
1ixlA	131	17.02	d.38.1.5	90717
1uv6A	210	17.94	b.96.1.1	100030
1yliA	153	18.07	d.38.1.1	123651
1g5cA	170	18.09	c.53.2.1	60264
1sv6A	269	18.52	d.177.1.1	106043
1bh9B	89	18.65	a.22.1.3	16485
1eguA	731	19.04	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2eisA	133	19.26		
1cnv	299	19.62		
1hdhA	536	20.76	c.76.1.2	65805
1pm4A	119	21.74	b.135.1.1	94891
1j34B	123	22.10	d.169.1.1	84049
2o1rA	81	22.89		
2hfnA	153	23.32		
1zkiA	133	23.54	d.38.1.5	125199
1ea9C	583	24.29	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
2eb4A	267	26.03		
1vpmA	169	26.88	d.38.1.1	113967
1vmoA	163	27.32	b.77.1.1	27974
3bgeA	201	27.60		
2ayhA	214	27.83	b.29.1.2	24172
2jssB	62	29.65		
2vlqB	134	30.12		
1ujsA	88	31.86	a.14.1.1	99467
1at0A	145	31.88	b.86.1.1	28374
1dfnA	30	32.42	g.9.1.1	44570
1bqcA	302	32.66	c.1.8.3	28831
1k2dB	189	33.67	b.1.1.2,d.19.1.1	84293,84294
1zmiA	29	34.93		
1s68A	249	37.13	d.142.2.4	98591
1i9bA	217	37.76	b.96.1.1	62084
1jk8B	190	38.01	b.1.1.2,d.19.1.1	63147,63148
1a8h	500	38.57		
1wd3A	482	39.51	b.29.1.21,b.42.8.1	109233,109234
1l9xA	315	39.66	c.23.16.1	73762
1wmiA	90	40.46	d.298.1.2	121045
2agtA	319	40.56		
1f60B	94	42.22	d.58.12.1	39307
1ieaB	228	42.36	b.1.1.2,d.19.1.1	21632,38206
1aopA	497	43.61	d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1	39501,39502,41425,41426
1jqoA	970	43.97	c.1.12.3	77160
2guyA	478	44.27	b.71.1.1,c.1.8.1	135754,135755
1ux2A	212	44.86	b.96.1.1	100132
2a6sA	84	45.52	d.298.1.1	126305
3bevB	99	46.38		
2d49A	53	46.45		
2q2bA	179	47.12		
2id1A	130	47.30		
2uwaA	274	47.52		
1zj8A	566	48.03		
2i33A	258	48.91		
1fsuA	492	50.22	c.76.1.2	35032
1kqzA	273	50.51	c.1.8.5	68844
1npoA	95	52.13	b.9.1.1	23270
2essA	248	53.56	d.38.1.8,d.38.1.8	132346,132347
1yewA	382	53.60		
1ej6B	1275	56.36	i.7.1.1	45968
2f2hA	773	59.36	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2jnsA	90	60.08		
2bj0A	203	61.91		
1sx5A	244	62.50	c.52.1.2	99023
1dysA	348	62.54	c.6.1.1	30669
2oauA	306	63.24	b.38.1.3,d.58.43.1,f.34.1.1	138978,138979,138980
2db7A	64	64.12		
2phcB	225	64.18		
3c66C	26	66.74		
1qhoA	686	68.23	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21844,22513,27751,28738
2ozlB	341	70.16	c.36.1.7,c.48.1.2	139447,139448
2pgbB	259	74.05		
1va0A	239	75.71	c.90.1.1	119899
1tuc	63	76.21		
1sawA	225	76.49	d.177.1.1	112050
1eyvA	156	76.83	a.79.1.1	18446
1rtuA	114	77.52	d.1.1.4	36139
2hykA	245	78.19		
1n7hA	381	80.69	c.2.1.2	80250
1c3wA	222	80.97	f.13.1.1	43405
2bshA	125	81.19		
1uw6A	211	83.14	b.96.1.1	100079
1jfxA	217	83.38	c.1.8.8	62943
2r3uA	211	83.74		
2cvhA	220	85.80		
1vd6A	224	86.99	c.1.18.3	119991
1r4yA	136	87.86	d.1.1.3	97056
1fusA	106	88.27	d.1.1.4	36050
1tn3A	137	88.56	d.169.1.1	42423
2ownA	262	88.60		
3c26A	266	89.06		
2jrnA	163	89.74