# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1o1zA 234 2.645 c.1.18.3 86555 2v1oA 151 3.737 1y93A 159 6.303 d.92.1.11 122772 2nudC 35 6.418 1wxxA 382 6.476 b.122.1.9,c.66.1.51 121418,121419 2fxtA 192 6.516 1hdfA 102 6.939 b.11.1.1 23627 2oryA 346 9.556 2o1rA 81 10.82 1g5cA 170 11.19 c.53.2.1 60264 1qw9A 502 11.32 b.71.1.2,c.1.8.3 96466,96467 1vr8A 142 11.90 d.312.1.1 120445 3b7kA 333 11.94 2gvhA 288 12.31 d.38.1.1,d.38.1.1 135776,135777 1hdhA 536 13.60 c.76.1.2 65805 2qmjA 870 13.67 1rdsA 105 15.15 d.1.1.4 36236 2eb4A 267 15.15 2bmoA 447 16.25 b.33.1.2,d.129.3.3 128804,128805 3cjsA 60 17.33 3bjkA 153 17.63 1zkiA 133 17.74 d.38.1.5 125199 1eguA 731 18.62 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1yliA 153 18.80 d.38.1.1 123651 1p3cA 215 18.82 b.47.1.1 93996 1n7oA 721 19.23 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1sv6A 269 20.05 d.177.1.1 106043 2pgbB 259 20.81 1j34B 123 20.99 d.169.1.1 84049 1uv6A 210 21.31 b.96.1.1 100030 1bh9B 89 21.71 a.22.1.3 16485 1npoA 95 21.89 b.9.1.1 23270 2eisA 133 22.64 2hfnA 153 25.71 1a79A 171 25.83 c.52.2.1,d.75.1.1 33340,39739 1i9bA 217 28.28 b.96.1.1 62084 1ixlA 131 28.67 d.38.1.5 90717 1cnv 299 29.29 3bevB 99 29.51 2jssB 62 30.17 1zmiA 29 31.17 1s68A 249 32.27 d.142.2.4 98591 1dfnA 30 32.74 g.9.1.1 44570 1kqzA 273 32.78 c.1.8.5 68844 1bqcA 302 35.80 c.1.8.3 28831 2vlqB 134 38.42 1pm4A 119 38.61 b.135.1.1 94891 1zj8A 566 38.68 2db7A 64 38.97 1vmoA 163 40.10 b.77.1.1 27974 2q2bA 179 40.60 1k2dB 189 40.88 b.1.1.2,d.19.1.1 84293,84294 1wmiA 90 41.03 d.298.1.2 121045 1jqoA 970 42.47 c.1.12.3 77160 1aukA 489 42.57 c.76.1.2 35030 1vpmA 169 43.18 d.38.1.1 113967 1n7hA 381 43.31 c.2.1.2 80250 1at0A 145 43.75 b.86.1.1 28374 1jk8B 190 44.27 b.1.1.2,d.19.1.1 63147,63148 1l9xA 315 44.66 c.23.16.1 73762 1dysA 348 44.91 c.6.1.1 30669 2egjA 128 47.69 3bgeA 201 48.54 2id1A 130 49.47 2ayhA 214 50.29 b.29.1.2 24172 1ieaB 228 51.92 b.1.1.2,d.19.1.1 21632,38206 2guyA 478 51.98 b.71.1.1,c.1.8.1 135754,135755 1ujsA 88 58.11 a.14.1.1 99467 2pliA 91 58.64 2oaiA 94 59.01 1q25A 432 59.25 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 2o5uA 148 60.43 1ux2A 212 61.17 b.96.1.1 100132 1wd3A 482 61.70 b.29.1.21,b.42.8.1 109233,109234 2hnuA 81 62.02 2uwaA 274 63.14 2ozlB 341 63.58 c.36.1.7,c.48.1.2 139447,139448 1sx5A 244 64.17 c.52.1.2 99023 2d49A 53 65.32 1x8hA 228 67.48 d.157.1.1 114961 1s5uA 138 69.05 d.38.1.1 98573 2qx0A 159 69.33 1z54A 132 71.60 d.38.1.1 124450 2ielA 138 71.96 2essA 248 74.19 d.38.1.8,d.38.1.8 132346,132347 1s3aA 102 76.07 c.47.1.22 118847 1bvqA 141 76.45 d.38.1.1 38542 1wluA 136 77.58 d.38.1.5 121015 2a6sA 84 77.71 d.298.1.1 126305 2nujA 163 77.82 d.38.1.1 138608 2nxcA 254 78.66 c.66.1.39 138739 1vd6A 224 78.86 c.1.18.3 119991 2bj0A 203 79.94 1jk4A 89 80.14 b.9.1.1 77130 1fsuA 492 80.83 c.76.1.2 35032 1f60B 94 82.25 d.58.12.1 39307 2fujA 137 82.58 d.38.1.1 134175 2pm1A 30 82.84 2hykA 245 83.30 1j1yA 136 83.43 d.38.1.5 90776 1ea9C 583 84.27 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1c3wA 222 85.30 f.13.1.1 43405 2r3uA 211 85.55 1ej6B 1275 85.69 i.7.1.1 45968 1a8h 500 86.66 2oafA 151 86.71 1f9yA 158 87.66 d.58.30.1 83249 2cyeA 133 89.96 d.38.1.1 131021