# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2v1oA 151 0.9699 1o1zA 234 1.479 c.1.18.3 86555 2nudC 35 2.927 1hdfA 102 3.640 b.11.1.1 23627 2oryA 346 3.795 1vr8A 142 4.192 d.312.1.1 120445 1y93A 159 4.625 d.92.1.11 122772 1hdhA 536 5.615 c.76.1.2 65805 3b7kA 333 5.961 3cjsA 60 6.759 1n7oA 721 7.243 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1wxxA 382 7.679 b.122.1.9,c.66.1.51 121418,121419 2bmoA 447 7.942 b.33.1.2,d.129.3.3 128804,128805 2eb4A 267 8.017 1p3cA 215 9.431 b.47.1.1 93996 3bjkA 153 11.04 1rdsA 105 11.27 d.1.1.4 36236 1zmiA 29 12.45 1eguA 731 12.53 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1dfnA 30 12.74 g.9.1.1 44570 1g5cA 170 12.96 c.53.2.1 60264 1yliA 153 13.09 d.38.1.1 123651 1ixlA 131 13.16 d.38.1.5 90717 2qmjA 870 13.36 1sv6A 269 13.48 d.177.1.1 106043 2gvhA 288 13.68 d.38.1.1,d.38.1.1 135776,135777 2fxtA 192 13.77 2eisA 133 14.69 1zkiA 133 14.94 d.38.1.5 125199 1bh9B 89 15.57 a.22.1.3 16485 1qw9A 502 16.17 b.71.1.2,c.1.8.3 96466,96467 1zj8A 566 16.61 1npoA 95 18.76 b.9.1.1 23270 1s68A 249 19.58 d.142.2.4 98591 2pgbB 259 22.62 1vmoA 163 22.63 b.77.1.1 27974 1sx5A 244 22.66 c.52.1.2 99023 2o1rA 81 23.09 1aukA 489 23.58 c.76.1.2 35030 1k2dB 189 24.59 b.1.1.2,d.19.1.1 84293,84294 2vlqB 134 24.63 2uwaA 274 24.70 2jssB 62 24.77 1fsuA 492 26.49 c.76.1.2 35032 2nujA 163 26.50 d.38.1.1 138608 2q2bA 179 26.73 1at0A 145 26.90 b.86.1.1 28374 1uv6A 210 26.93 b.96.1.1 100030 1kqzA 273 27.12 c.1.8.5 68844 1j34B 123 27.13 d.169.1.1 84049 1pm4A 119 27.71 b.135.1.1 94891 2egjA 128 28.42 1sawA 225 30.94 d.177.1.1 112050 3bgeA 201 31.70 1bqcA 302 31.90 c.1.8.3 28831 2o5uA 148 33.74 3darA 105 33.91 2a6sA 84 33.98 d.298.1.1 126305 1jk8B 190 36.15 b.1.1.2,d.19.1.1 63147,63148 1z54A 132 36.35 d.38.1.1 124450 2essA 248 38.96 d.38.1.8,d.38.1.8 132346,132347 1wmiA 90 38.98 d.298.1.2 121045 2guyA 478 40.47 b.71.1.1,c.1.8.1 135754,135755 2oiwA 136 41.06 2dfuA 264 41.14 1ta3A 274 41.42 c.1.8.5 106731 1rtuA 114 41.58 d.1.1.4 36139 2hfnA 153 41.65 2agtA 319 41.87 1i9bA 217 41.99 b.96.1.1 62084 2ownA 262 42.32 2pm1A 30 43.84 1aopA 497 44.05 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1yewA 382 44.91 2cyeA 133 45.07 d.38.1.1 131021 3bevB 99 45.62 2nxcA 254 46.14 c.66.1.39 138739 1bvqA 141 46.54 d.38.1.1 38542 1vpmA 169 47.89 d.38.1.1 113967 2i33A 258 48.48 2hnuA 81 48.60 1s5uA 138 49.97 d.38.1.1 98573 1wluA 136 50.34 d.38.1.5 121015 1ujsA 88 51.78 a.14.1.1 99467 2pzhA 135 52.83 2av9A 147 53.62 d.38.1.1 127365 2ayhA 214 53.64 b.29.1.2 24172 1j1yA 136 53.98 d.38.1.5 90776 1rl2A 137 54.16 b.34.5.3,b.40.4.5 24610,25342 1tuc 63 54.95 2gf6A 135 55.07 d.38.1.1 135077 2fujA 137 55.41 d.38.1.1 134175 1w9sA 142 56.45 b.18.1.10 114416 2hlyA 207 56.48 1a8h 500 56.74 2dx0A 138 57.13 1lfpA 249 57.32 e.39.1.1 73885 1jk4A 89 57.60 b.9.1.1 77130 1cnv 299 57.89 2fywA 267 58.12 c.135.1.1 134408 2hhjA 267 58.30 c.60.1.1 136497 1xw3A 110 58.83 2db7A 64 60.74 1ieaB 228 60.83 b.1.1.2,d.19.1.1 21632,38206 1l9xA 315 61.00 c.23.16.1 73762 2a08A 60 61.43 2d49A 53 62.80 1jqoA 970 62.82 c.1.12.3 77160 2j13A 247 62.92 c.6.2.3 137934 1fngA 192 62.92 b.1.1.2,d.19.1.1 59904,59905 1tf4A 605 63.43 a.102.1.2,b.2.2.2 18827,22393 1a79A 171 63.75 c.52.2.1,d.75.1.1 33340,39739 1vd6A 224 63.96 c.1.18.3 119991 2jrfA 184 64.66 2e4tA 519 65.14 2dbsA 90 67.60 1ux2A 212 69.19 b.96.1.1 100132 2b3oA 532 69.87 3c66C 26 70.15 2phcB 225 70.41 1pzsA 208 70.61 b.1.8.1 104397 1dysA 348 71.47 c.6.1.1 30669 1uxzA 131 71.81 b.18.1.10 100170 1oebA 62 71.86 b.34.2.1 86909 1njkA 156 71.89 d.38.1.1 85818 2ielA 138 72.55 1jfxA 217 74.19 c.1.8.8 62943 1fusA 106 74.23 d.1.1.4 36050 1f60B 94 74.37 d.58.12.1 39307 2hx5A 152 75.40 d.38.1.1 136837 2r3uA 211 75.80 1wzoA 246 76.89 1utiA 58 77.17 b.34.2.1 99962 1kzkA 99 78.62 b.50.1.1 73371 2qx0A 159 79.82 2jrnA 163 79.97 1lo7A 141 80.38 d.38.1.1 74144 1umzA 278 81.40 b.29.1.2 99639 2bj0A 203 81.58 1s6lA 212 81.61 1bif 469 81.62 2fcoA 200 81.63 2gefA 217 81.88 2oafA 151 82.80 1uy4A 145 82.93 b.18.1.10 108131 1bbzA 58 83.52 b.34.2.1 24477 2drmA 58 84.23 2cy9A 140 84.77 d.38.1.5 131019 2hykA 245 85.88 1w70A 60 87.62 1x8hA 228 88.18 d.157.1.1 114961