# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2v1oA 151 2.202 1o1zA 234 2.292 c.1.18.3 86555 1hdfA 102 3.474 b.11.1.1 23627 1wxxA 382 3.875 b.122.1.9,c.66.1.51 121418,121419 2nudC 35 4.681 2oryA 346 5.570 2fxtA 192 5.890 1hdhA 536 7.151 c.76.1.2 65805 3b7kA 333 7.590 1y93A 159 9.156 d.92.1.11 122772 3cjsA 60 9.176 2eb4A 267 9.294 1eguA 731 9.452 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1n7oA 721 10.18 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1sv6A 269 10.20 d.177.1.1 106043 1vr8A 142 10.80 d.312.1.1 120445 1zmiA 29 12.40 1rdsA 105 12.44 d.1.1.4 36236 2gvhA 288 12.64 d.38.1.1,d.38.1.1 135776,135777 1dfnA 30 13.15 g.9.1.1 44570 2pgbB 259 13.34 3bjkA 153 13.35 1zkiA 133 13.47 d.38.1.5 125199 1g5cA 170 14.57 c.53.2.1 60264 2qmjA 870 14.92 1cnv 299 14.95 2bmoA 447 16.21 b.33.1.2,d.129.3.3 128804,128805 1qw9A 502 16.97 b.71.1.2,c.1.8.3 96466,96467 2eisA 133 17.47 1p3cA 215 17.62 b.47.1.1 93996 1bh9B 89 18.05 a.22.1.3 16485 1uv6A 210 19.81 b.96.1.1 100030 2agtA 319 20.37 1at0A 145 20.94 b.86.1.1 28374 1n7hA 381 21.06 c.2.1.2 80250 1yliA 153 22.04 d.38.1.1 123651 1s68A 249 23.67 d.142.2.4 98591 1i9bA 217 24.27 b.96.1.1 62084 2o1rA 81 25.63 1a79A 171 26.00 c.52.2.1,d.75.1.1 33340,39739 2uwaA 274 27.10 3bgeA 201 27.34 1ixlA 131 27.63 d.38.1.5 90717 2hfnA 153 29.11 1euvA 221 30.57 d.3.1.7 37133 1vpmA 169 30.60 d.38.1.1 113967 1l9xA 315 30.63 c.23.16.1 73762 1fsuA 492 30.70 c.76.1.2 35032 1vmoA 163 31.70 b.77.1.1 27974 2vlqB 134 31.72 2pm1A 30 31.85 1j34B 123 31.90 d.169.1.1 84049 1k2dB 189 32.07 b.1.1.2,d.19.1.1 84293,84294 2ozlB 341 33.20 c.36.1.7,c.48.1.2 139447,139448 2ayhA 214 33.30 b.29.1.2 24172 2jssB 62 33.86 1bqcA 302 34.04 c.1.8.3 28831 3bevB 99 34.41 1pm4A 119 35.06 b.135.1.1 94891 1npoA 95 35.37 b.9.1.1 23270 1jk8B 190 35.51 b.1.1.2,d.19.1.1 63147,63148 1zj8A 566 36.33 1jqoA 970 37.67 c.1.12.3 77160 2egjA 128 39.69 1x8hA 228 40.37 d.157.1.1 114961 2q2bA 179 40.84 1edg 380 41.96 2o5uA 148 43.37 2e4tA 519 44.49 1sx5A 244 44.64 c.52.1.2 99023 2ielA 138 45.66 2pzhA 135 45.68 1yewA 382 46.58 1s5uA 138 47.37 d.38.1.1 98573 1nslA 184 47.56 d.108.1.1 86137 1kqzA 273 47.97 c.1.8.5 68844 2guyA 478 48.74 b.71.1.1,c.1.8.1 135754,135755 2hhjA 267 50.94 c.60.1.1 136497 1js3A 486 52.74 c.67.1.6 67215 1ux2A 212 53.62 b.96.1.1 100132 1z54A 132 53.63 d.38.1.1 124450 1aukA 489 54.09 c.76.1.2 35030 2i33A 258 54.43 2nujA 163 54.79 d.38.1.1 138608 1a8h 500 58.19 2essA 248 58.86 d.38.1.8,d.38.1.8 132346,132347 1ieaB 228 59.48 b.1.1.2,d.19.1.1 21632,38206 1r4yA 136 61.20 d.1.1.3 97056 1wluA 136 61.83 d.38.1.5 121015 1eyvA 156 61.94 a.79.1.1 18446 2j13A 247 62.81 c.6.2.3 137934 1aopA 497 63.64 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1wmiA 90 65.85 d.298.1.2 121045 2bgsA 344 67.16 2d49A 53 67.20 2fujA 137 67.33 d.38.1.1 134175 2hlyA 207 67.52 1c01A 76 67.53 b.11.1.5 23633 2cyeA 133 69.39 d.38.1.1 131021 1bvqA 141 69.49 d.38.1.1 38542 1c3wA 222 70.21 f.13.1.1 43405 2bj0A 203 70.25 2oafA 151 72.07 1uw6A 211 72.63 b.96.1.1 100079 1j1yA 136 74.08 d.38.1.5 90776 1tf4A 605 74.11 a.102.1.2,b.2.2.2 18827,22393 2jrfA 184 75.28 1wd3A 482 75.45 b.29.1.21,b.42.8.1 109233,109234 1umzA 278 76.69 b.29.1.2 99639 1tuc 63 77.39 1iuhA 198 78.01 d.61.1.2 83711 1f60B 94 78.12 d.58.12.1 39307 2av9A 147 81.29 d.38.1.1 127365 1ea9C 583 82.21 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2ownA 262 83.43 2as0A 396 84.91 b.122.1.9,c.66.1.51 127227,127228 3darA 105 85.89 1rl2A 137 85.95 b.34.5.3,b.40.4.5 24610,25342 1vd6A 224 88.24 c.1.18.3 119991 1aiwA 62 88.59 b.72.2.1 27808 1upiA 225 88.78 b.82.1.1 99757 1ujsA 88 88.93 a.14.1.1 99467 2a6sA 84 89.69 d.298.1.1 126305 3c66C 26 89.84 2j8mA 172 89.89