# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2nxcA	254	0.2002	c.66.1.39	138739
2jrnA	163	0.7599		
1ukkA	142	0.8756	d.227.1.1	99491
1n2fA	142	1.479	d.227.1.1	79853
1zb9A	143	1.727		
2jraA	67	1.745		
1euvA	221	1.962	d.3.1.7	37133
2dbsA	90	2.275		
1ujsA	88	5.357	a.14.1.1	99467
1qwiA	143	5.448	d.227.1.1	96474
2o1rA	81	9.064		
2if1A	126	9.420	d.64.1.1	39547
1hdfA	102	10.86	b.11.1.1	23627
1ieaB	228	11.05	b.1.1.2,d.19.1.1	21632,38206
1uspA	139	11.12	d.227.1.1	99879
2jvmA	80	11.58		
2xatA	212	11.99	b.81.1.3	28058
1bbzA	58	12.02	b.34.2.1	24477
2g9wA	138	12.34		
1wwcA	118	12.60	b.1.1.4	21778
2j6fA	62	12.61		
2oauA	306	12.95	b.38.1.3,d.58.43.1,f.34.1.1	138978,138979,138980
2ihcA	124	13.50		
2burA	209	13.93	b.3.6.1	129227
2pgdA	482	14.67	a.100.1.1,c.2.1.6	18778,30190
1jsmA	325	16.82	b.19.1.2	63264
2a28A	54	16.90		
2o88A	58	18.50		
1weuA	91	20.96	g.50.1.2	114565
1eo9A	209	21.84	b.3.6.1	22731
3darA	105	23.10		
1up9A	107	24.04	a.138.1.1	113390
2a08A	60	24.36		
1yr2A	741	24.96		
2oryA	346	26.70		
1j0pA	108	27.01	a.138.1.1	90743
2fxtA	192	28.01		
2ql8A	143	31.93		
1ootA	60	31.94	b.34.2.1	93386
1aopA	497	32.62	d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1	39501,39502,41425,41426
1aboA	62	32.69	b.34.2.1	24474
2jssB	62	34.36		
2fkcA	247	34.48		
2vkjA	106	35.24		
1mvfD	82	35.84	b.129.1.1	85143
3pcgA	200	36.67	b.3.6.1	22647
3ctdA	213	37.82		
1mo0A	275	40.20	c.1.1.1	79329
2bjoA	136	41.21		
2fwvA	226	41.84		
3bjoA	103	42.00		
3c8wA	255	43.01		
2r9gA	204	43.20		
2essA	248	43.62	d.38.1.8,d.38.1.8	132346,132347
1vr8A	142	44.46	d.312.1.1	120445
2cpcA	113	45.40		
1bx7	55	46.14		
1wxxA	382	47.45	b.122.1.9,c.66.1.51	121418,121419
1pylA	97	51.08	d.1.1.2	104391
1e5eA	404	51.78	c.67.1.3	59265
1zj8A	566	51.93		
1x2kA	68	52.72		
1xrsB	262	52.91	c.23.6.1,d.230.4.1	115884,115885
1wwbX	103	52.95	b.1.1.4	21777
1mgrA	99	53.31	d.1.1.2	79106
1i45A	248	53.85	c.1.1.1	61665
3b47A	134	54.34		
2cthA	107	55.82	a.138.1.1	19652
1p32A	209	55.92	d.25.1.1	38379
1mhyD	521	60.03	a.25.1.2	16780
3breA	358	61.62		
1nnvA	110	62.88	d.17.7.1	92012
1uj0A	62	62.92	b.34.2.1	99449
2onfA	140	63.92		
1u04A	771	64.49	b.34.14.1,c.55.3.10	107539,107540
2qtxA	71	66.61		
1aw2A	256	67.12	c.1.1.1	28523
1y93A	159	69.22	d.92.1.11	122772
1rmwA	212	70.25		
2q81A	119	74.64		
1w70A	60	77.00		
1jb0J	41	77.18	f.23.18.1	62827
2ak5A	64	77.43		
2egtA	132	77.82		
2hhiA	204	78.32		
1utiA	58	78.39	b.34.2.1	99962
1xzzA	246	81.20		
3b42A	135	81.45		
3by6A	126	81.66		
1pyfA	312	82.47	c.1.7.1	95334
2cy3A	118	82.80	a.138.1.1	19649
1x4tA	92	82.92	a.2.15.1	121698
2j7nA	1022	85.27		
1o5xA	248	87.23	c.1.1.1	92528
2glcA	342	88.90		
1n55A	251	89.18	c.1.1.1	80007