# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qmjA 870 0.8502 2oryA 346 2.056 1wxxA 382 2.745 b.122.1.9,c.66.1.51 121418,121419 1kqzA 273 4.787 c.1.8.5 68844 2v7pA 310 4.852 1o1zA 234 4.907 c.1.18.3 86555 1vr8A 142 5.395 d.312.1.1 120445 2pzhA 135 5.530 1pyfA 312 6.501 c.1.7.1 95334 1euvA 221 7.386 d.3.1.7 37133 1mvfD 82 8.376 b.129.1.1 85143 2fs3A 282 8.886 1hdhA 536 9.387 c.76.1.2 65805 2r77A 205 10.07 2oauA 306 10.32 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1hdfA 102 10.34 b.11.1.1 23627 1g5cA 170 10.87 c.53.2.1 60264 2anuA 255 10.88 c.6.3.1 127058 1vjjA 692 11.00 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 2r9gA 204 12.37 2egjA 128 15.10 1wwcA 118 15.45 b.1.1.4 21778 1bvqA 141 16.19 d.38.1.1 38542 1uv6A 210 16.39 b.96.1.1 100030 1g0dA 695 17.12 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2v6eA 558 17.39 1aopA 497 18.44 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1lo7A 141 19.09 d.38.1.1 74144 2nxcA 254 19.11 c.66.1.39 138739 1p3cA 215 21.96 b.47.1.1 93996 3c8wA 255 22.07 1lfpA 249 22.45 e.39.1.1 73885 2jraA 67 22.73 1jqoA 970 22.91 c.1.12.3 77160 1i9bA 217 23.06 b.96.1.1 62084 1ieaB 228 23.80 b.1.1.2,d.19.1.1 21632,38206 2nq5A 755 24.34 1vmoA 163 25.06 b.77.1.1 27974 1z54A 132 25.31 d.38.1.1 124450 1y93A 159 26.08 d.92.1.11 122772 2fwvA 226 26.16 1bh9B 89 27.53 a.22.1.3 16485 2o5uA 148 27.58 2dbsA 90 28.12 2aliA 158 28.30 d.38.1.1 126976 1s3iA 310 29.88 b.46.1.1,c.65.1.1 98435,98436 1rdsA 105 30.80 d.1.1.4 36236 1s5uA 138 32.33 d.38.1.1 98573 1eguA 731 33.17 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1vd6A 224 33.36 c.1.18.3 119991 2av9A 147 35.01 d.38.1.1 127365 1wdaA 670 35.08 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 1ta3A 274 35.60 c.1.8.5 106731 2ac1A 541 36.20 2hfnA 153 36.85 1njkA 156 37.32 d.38.1.1 85818 2ihcA 124 39.34 1t8qA 336 41.17 c.1.18.3 106669 1n7oA 721 42.19 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1fsuA 492 42.52 c.76.1.2 35032 2oiwA 136 44.85 1pm4A 119 45.79 b.135.1.1 94891 1ydyA 356 47.65 c.1.18.3 123006 1wmiA 90 47.77 d.298.1.2 121045 2if1A 126 57.67 d.64.1.1 39547 1i0vA 104 57.78 d.1.1.4 36054 2g9wA 138 59.03 1ux2A 212 59.42 b.96.1.1 100132 2fujA 137 59.63 d.38.1.1 134175 1u1jA 765 61.92 c.1.22.2,c.1.22.2 107590,107591 2z3yA 662 62.66 1s3sG 127 63.11 d.15.1.2 98457 2o1rA 81 63.24 2nujA 163 65.46 d.38.1.1 138608 2imlA 199 65.47 1zsxA 347 67.73 2jrnA 163 68.43 1weuA 91 69.40 g.50.1.2 114565 2bj0A 203 69.94 3bjkA 153 71.87 1jb0J 41 74.08 f.23.18.1 62827 2hhiA 204 75.14 2jnsA 90 75.44 2eisA 133 77.45 1ex0A 731 78.11 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 2pblA 262 79.99 1b9oA 123 80.78 d.2.1.2 36597 2z61A 370 80.88 1uw6A 211 81.28 b.96.1.1 100079 3bgeA 201 81.93 2oafA 151 83.66 1npoA 95 85.12 b.9.1.1 23270 2pzmA 330 85.52 2vqeB 256 86.92 2rjbA 455 87.82 1v37A 177 88.56 c.60.1.1 113497 3ctdA 213 89.47 3ck1A 150 89.79