# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mgrA 99 1.846 d.1.1.2 79106 1tocR 120 3.135 g.8.1.2,g.8.1.2 44558,44559 1pylA 97 3.283 d.1.1.2 104391 2htdA 140 3.482 2e1mB 130 3.765 1t0fC 54 4.374 1n9lA 109 4.751 d.110.3.6 85468 1h8eI 50 5.621 a.137.8.1 60758 1jdw 423 6.412 1zbxB 141 7.111 d.339.1.1 124877 2cjpA 328 7.213 1jnuA 104 7.476 d.110.3.6 71762 2vlqB 134 9.026 2bijA 305 9.204 1v37A 177 9.865 c.60.1.1 113497 2hljA 157 9.913 d.38.1.1 136570 2o9uX 97 10.17 d.17.1.1 138960 2r6fA 972 10.39 2a7lA 136 12.02 d.20.1.1 126350 2gj3A 120 14.90 1bd8 156 16.25 1xebA 150 16.29 d.108.1.1 115219 2p75A 177 16.74 3pcgA 200 17.06 b.3.6.1 22647 2gq0A 303 17.58 1efnB 152 18.80 d.102.1.1 40699 2qmjA 870 18.91 1bd8A 156 20.43 d.211.1.1 19157 2gykB 134 20.95 d.4.1.1 135857 2a9iA 113 21.08 2igsA 219 21.91 1squA 155 24.71 d.252.1.1 98971 1bywA 110 29.07 d.110.3.6 40912 1v4aA 440 29.68 a.24.16.4,d.218.1.9 108350,108351 1umwA 237 32.28 d.223.1.2,d.223.1.2 99631,99632 1fitA 147 33.59 d.13.1.1 37499 1lniA 96 33.81 d.1.1.2 74046 1bgpA 309 34.10 a.93.1.1 18690 1zboA 210 34.77 b.122.1.10 124859 1y93A 159 35.27 d.92.1.11 122772 1ojqA 212 35.27 d.166.1.1 93146 1k3xA 262 35.90 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2ijrA 300 35.98 1ny1A 240 38.76 c.6.2.3 86395 1hdoA 206 39.09 c.2.1.2 60965 1p65A 73 39.65 d.254.1.1 94156 2cosA 54 41.63 a.5.2.1 130683 1ivnA 190 42.82 c.23.10.5 83719 1fit 147 43.78 1rgeA 96 44.22 d.1.1.2 36028 2rl8A 154 45.79 1f9yA 158 46.91 d.58.30.1 83249 1npoA 95 49.83 b.9.1.1 23270 1i76A 163 50.74 d.92.1.11 61877 2r40D 266 51.94 1vqoC 246 52.36 c.22.1.1 120364 2pzhA 135 52.59 2h3jA 75 52.76 1fr2B 134 53.27 d.4.1.1 83257 1z1aA 142 53.65 d.339.1.1 124344 2ffuA 501 54.31 2a07F 93 54.86 a.4.5.14 125938 2if6A 186 58.81 1bdo 80 59.47 1jj2X 240 60.18 c.9.2.1 63109 2fd5A 180 60.95 a.4.1.9,a.121.1.1 133291,133292 1h98A 78 61.19 d.58.1.2 65743 1yb5A 351 61.30 b.35.1.2,c.2.1.1 116601,116602 1fusA 106 62.96 d.1.1.4 36050 1molA 94 65.03 d.17.1.1 37988 2qhoB 53 65.75 2op6A 152 65.77 1iae 200 65.95 1njrA 284 67.47 c.50.1.2 103858 1nycA 111 69.14 b.61.2.2 92336 2q5iA 691 70.13 1lqtA 456 71.06 c.3.1.1,c.4.1.1 74198,74199 1qr0A 228 73.01 d.150.1.1,d.150.1.1 59038,59039 2ciuA 127 73.40 1wmiA 90 76.07 d.298.1.2 121045 1r61A 207 76.63 c.8.8.1 97138 1enfA 212 77.35 b.40.2.2,d.15.6.1 25198,37787 2o8iA 165 80.09 1okhA 46 80.62 g.13.1.1 93253 1i0vA 104 81.25 d.1.1.4 36054 2c81A 418 83.30 1wwhA 119 83.53 d.58.7.1 121358 1iab 200 83.71 2btlA 134 84.95 b.148.1.1 129154 1rdsA 105 85.47 d.1.1.4 36236 1zmtA 254 85.54 c.2.1.2 125363 2hhiA 204 86.52 2engA 210 87.77 b.52.1.1 26895 1k9jA 139 87.80 d.169.1.1 68353