This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA M A 2 2 NATAA R A 3 3 NATAA D A 4 4 NATAA M A 5 5 NATAA T A 6 6 NATAA E A 7 7 NATAA E A 8 8 NATAA T A 9 9 NATAA R A 10 10 NATAA K A 11 11 NATAA D A 12 12 NATAA L A 13 13 NATRO P A 14 14 NATRO P A 15 15 NATAA E A 16 16 NATAA A A 17 17 NATAA L A 18 18 NATAA R A 19 19 NATAA A A 20 20 NATAA L A 21 21 NATAA A A 22 22 NATAA E A 23 23 NATAA A A 24 24 NATAA E A 25 25 NATAA E A 26 26 NATAA R A 27 27 NATAA R A 28 28 NATAA R A 29 29 NATAA R A 30 30 NATAA A A 31 31 NATAA K A 32 32 NATAA A A 33 33 NATAA L A 34 34 NATAA D A 35 35 NATAA L A 36 36 NATRO P A 37 37 NATAA K A 38 38 NATAA E A 39 39 NATAA I A 40 40 NATAA G A 41 41 NATAA G A 42 42 NATAA R A 43 43 NATAA N A 44 44 NATAA G A 45 45 NATRO P A 46 46 NATAA E A 47 47 NATRO P A 48 48 NATAA V A 49 49 NATAA R A 50 50 NATAA F A 51 51 NATAA G A 52 52 NATAA D A 53 53 NATAA W A 54 54 NATAA E A 55 55 NATAA K A 56 56 NATAA K A 57 57 NATAA G A 58 58 NATAA I A 59 59 NATAA A A 60 60 NATAA I A 61 61 NATAA D A 62 62 NATAA F