PFRMAT RR TARGET T0484 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MRDMTEETRKDLPPEALRALAEAEERRRRAKALDLPKEIGGRNGPEPVRF GDWEKKGIAIDF 4 13 0 8 0.465323 4 14 0 8 0.432769 4 15 0 8 0.495565 4 16 0 8 0.714874 4 17 0 8 0.568619 4 18 0 8 0.507537 4 19 0 8 0.656047 4 20 0 8 0.639497 4 21 0 8 0.420646 4 22 0 8 0.445581 4 23 0 8 0.566116 4 24 0 8 0.367915 4 25 0 8 0.401017 4 26 0 8 0.537815 4 27 0 8 0.424273 4 28 0 8 0.488881 4 29 0 8 0.496246 4 30 0 8 0.518796 4 31 0 8 0.399659 4 32 0 8 0.605675 4 33 0 8 0.563372 4 34 0 8 0.368299 4 35 0 8 0.565801 4 36 0 8 0.389313 4 37 0 8 0.420655 4 38 0 8 0.540811 4 39 0 8 0.531508 4 40 0 8 0.368976 4 41 0 8 0.417632 4 42 0 8 0.336005 4 45 0 8 0.3552 4 46 0 8 0.402033 4 47 0 8 0.474523 4 48 0 8 0.515878 4 49 0 8 0.581995 4 50 0 8 0.536255 4 51 0 8 0.439463 4 52 0 8 0.362489 4 53 0 8 0.427122 4 54 0 8 0.383601 4 55 0 8 0.367855 4 56 0 8 0.342511 4 57 0 8 0.348559 4 58 0 8 0.450701 4 59 0 8 0.564506 5 14 0 8 0.393746 5 15 0 8 0.442402 5 16 0 8 0.529915 5 17 0 8 0.410562 5 18 0 8 0.384743 5 19 0 8 0.476656 5 20 0 8 0.430487 5 23 0 8 0.367573 5 26 0 8 0.353977 5 28 0 8 0.310993 5 29 0 8 0.315564 5 30 0 8 0.352495 5 32 0 8 0.432604 5 33 0 8 0.414436 5 35 0 8 0.412168 5 37 0 8 0.359127 5 38 0 8 0.44517 5 39 0 8 0.396872 5 40 0 8 0.331401 5 41 0 8 0.369798 5 46 0 8 0.314267 5 47 0 8 0.329563 5 48 0 8 0.377235 5 49 0 8 0.470116 5 50 0 8 0.429916 5 51 0 8 0.343017 6 15 0 8 0.331858 6 16 0 8 0.356467 6 35 0 8 0.327061 6 38 0 8 0.331671 6 49 0 8 0.36028 7 16 0 8 0.457005 7 17 0 8 0.330974 7 19 0 8 0.38519 7 20 0 8 0.355619 7 23 0 8 0.309004 7 32 0 8 0.36854 7 33 0 8 0.3494 7 35 0 8 0.376133 7 37 0 8 0.316226 7 38 0 8 0.368035 7 39 0 8 0.338852 7 47 0 8 0.312813 7 48 0 8 0.324993 7 49 0 8 0.409678 7 50 0 8 0.355591 8 17 0 8 0.4433 8 18 0 8 0.39218 8 19 0 8 0.4686 8 20 0 8 0.420383 8 23 0 8 0.347308 8 26 0 8 0.332102 8 30 0 8 0.330996 8 32 0 8 0.429581 8 33 0 8 0.424826 8 34 0 8 0.313026 8 35 0 8 0.453691 8 36 0 8 0.334894 8 37 0 8 0.403385 8 38 0 8 0.495766 8 39 0 8 0.428772 8 40 0 8 0.346335 8 41 0 8 0.396633 8 42 0 8 0.313534 8 45 0 8 0.327895 8 46 0 8 0.372536 8 47 0 8 0.394397 8 48 0 8 0.463189 8 49 0 8 0.521626 8 50 0 8 0.484836 8 51 0 8 0.387576 8 52 0 8 0.32448 8 53 0 8 0.34993 8 54 0 8 0.347914 8 55 0 8 0.327044 8 56 0 8 0.318469 8 59 0 8 0.331135 9 18 0 8 0.604382 9 19 0 8 0.710066 9 20 0 8 0.678415 9 21 0 8 0.463324 9 22 0 8 0.474376 9 23 0 8 0.593726 9 24 0 8 0.383807 9 25 0 8 0.41845 9 26 0 8 0.550528 9 27 0 8 0.435755 9 28 0 8 0.507749 9 29 0 8 0.502107 9 30 0 8 0.530511 9 31 0 8 0.416879 9 32 0 8 0.637722 9 33 0 8 0.604485 9 34 0 8 0.41006 9 35 0 8 0.623883 9 36 0 8 0.391685 9 37 0 8 0.448251 9 38 0 8 0.602154 9 39 0 8 0.586065 9 40 0 8 0.404452 9 41 0 8 0.462735 9 42 0 8 0.354394 9 45 0 8 0.364811 9 46 0 8 0.416035 9 47 0 8 0.486896 9 48 0 8 0.523823 9 49 0 8 0.624445 9 50 0 8 0.586425 9 51 0 8 0.440497 9 52 0 8 0.38107 9 53 0 8 0.402725 9 54 0 8 0.404031 9 55 0 8 0.371358 9 56 0 8 0.358718 9 57 0 8 0.366041 9 58 0 8 0.454356 9 59 0 8 0.511818 10 19 0 8 0.394517 10 20 0 8 0.340441 10 30 0 8 0.312186 10 32 0 8 0.39742 10 33 0 8 0.399357 10 35 0 8 0.407382 10 37 0 8 0.347744 10 38 0 8 0.412008 10 39 0 8 0.360857 10 40 0 8 0.311299 10 41 0 8 0.353687 10 48 0 8 0.317639 10 49 0 8 0.437317 10 50 0 8 0.373351 11 35 0 8 0.347634 11 37 0 8 0.331765 11 38 0 8 0.359999 11 39 0 8 0.309684 11 41 0 8 0.310039 11 46 0 8 0.321281 11 47 0 8 0.339635 11 48 0 8 0.346686 11 49 0 8 0.406548 11 50 0 8 0.396513 12 21 0 8 0.358008 12 22 0 8 0.382262 12 23 0 8 0.525117 12 25 0 8 0.329448 12 26 0 8 0.470456 12 27 0 8 0.343482 12 28 0 8 0.425207 12 29 0 8 0.417007 12 30 0 8 0.435565 12 32 0 8 0.531464 12 33 0 8 0.479874 12 35 0 8 0.547267 12 36 0 8 0.332439 12 37 0 8 0.368043 12 38 0 8 0.495343 12 39 0 8 0.509161 12 41 0 8 0.364123 12 45 0 8 0.338683 12 46 0 8 0.327529 12 47 0 8 0.46796 12 48 0 8 0.449203 12 49 0 8 0.522725 12 50 0 8 0.466192 12 51 0 8 0.31279 12 53 0 8 0.378868 12 54 0 8 0.311748 12 55 0 8 0.319914 12 58 0 8 0.382751 12 59 0 8 0.557669 13 32 0 8 0.36111 13 33 0 8 0.360723 13 35 0 8 0.406337 13 37 0 8 0.354696 13 38 0 8 0.433941 13 39 0 8 0.39251 13 40 0 8 0.318634 13 41 0 8 0.364231 13 47 0 8 0.337627 13 48 0 8 0.360858 13 49 0 8 0.4461 13 50 0 8 0.409911 13 51 0 8 0.311081 14 23 0 8 0.395792 14 26 0 8 0.362193 14 28 0 8 0.32939 14 30 0 8 0.334795 14 32 0 8 0.378276 14 33 0 8 0.344242 14 35 0 8 0.399343 14 37 0 8 0.328955 14 38 0 8 0.378929 14 39 0 8 0.374518 14 41 0 8 0.32595 14 45 0 8 0.30939 14 47 0 8 0.345908 14 48 0 8 0.314137 14 49 0 8 0.418306 14 50 0 8 0.40741 14 58 0 8 0.337752 15 35 0 8 0.35066 15 37 0 8 0.320715 15 38 0 8 0.371671 15 39 0 8 0.331058 15 45 0 8 0.311894 15 46 0 8 0.30935 15 47 0 8 0.376171 15 48 0 8 0.342867 15 49 0 8 0.41584 15 50 0 8 0.435566 16 25 0 8 0.337111 16 26 0 8 0.499777 16 27 0 8 0.354551 16 28 0 8 0.439728 16 29 0 8 0.405044 16 30 0 8 0.415145 16 32 0 8 0.49934 16 33 0 8 0.450437 16 35 0 8 0.558472 16 36 0 8 0.360946 16 37 0 8 0.42104 16 38 0 8 0.537116 16 39 0 8 0.526407 16 40 0 8 0.316897 16 41 0 8 0.406286 16 42 0 8 0.314437 16 45 0 8 0.397005 16 46 0 8 0.393054 16 47 0 8 0.518242 16 48 0 8 0.482683 16 49 0 8 0.573507 16 50 0 8 0.560868 16 51 0 8 0.369025 16 52 0 8 0.367482 16 53 0 8 0.385535 16 54 0 8 0.36634 16 55 0 8 0.370316 16 56 0 8 0.314848 16 57 0 8 0.316454 16 58 0 8 0.431629 16 59 0 8 0.529446 17 26 0 8 0.517666 17 27 0 8 0.376457 17 28 0 8 0.464679 17 29 0 8 0.427581 17 30 0 8 0.447709 17 32 0 8 0.545182 17 33 0 8 0.50008 17 34 0 8 0.344687 17 35 0 8 0.600549 17 36 0 8 0.367848 17 37 0 8 0.416676 17 38 0 8 0.515632 17 39 0 8 0.527861 17 40 0 8 0.332305 17 41 0 8 0.408388 17 45 0 8 0.381174 17 46 0 8 0.328744 17 47 0 8 0.437296 17 48 0 8 0.422309 17 49 0 8 0.502628 17 50 0 8 0.463217 17 51 0 8 0.31117 17 55 0 8 0.31727 17 56 0 8 0.315688 17 57 0 8 0.332448 17 58 0 8 0.401849 17 59 0 8 0.411967 18 32 0 8 0.36209 18 33 0 8 0.340275 18 35 0 8 0.455298 18 37 0 8 0.346574 18 38 0 8 0.391097 18 39 0 8 0.379484 18 41 0 8 0.319889 18 45 0 8 0.336674 18 47 0 8 0.378689 18 48 0 8 0.336355 18 49 0 8 0.400083 18 50 0 8 0.376649 18 58 0 8 0.308982 19 28 0 8 0.436148 19 29 0 8 0.390858 19 30 0 8 0.409191 19 32 0 8 0.472041 19 33 0 8 0.396521 19 35 0 8 0.532526 19 37 0 8 0.352505 19 38 0 8 0.402074 19 39 0 8 0.43726 19 41 0 8 0.311987 19 45 0 8 0.357584 19 47 0 8 0.431319 19 48 0 8 0.354121 19 49 0 8 0.423182 19 50 0 8 0.417138 19 58 0 8 0.363834 19 59 0 8 0.436773 20 29 0 8 0.529906 20 30 0 8 0.557308 20 31 0 8 0.361857 20 32 0 8 0.654713 20 33 0 8 0.563677 20 34 0 8 0.34218 20 35 0 8 0.701353 20 36 0 8 0.350325 20 37 0 8 0.387941 20 38 0 8 0.485071 20 39 0 8 0.567365 20 41 0 8 0.35911 20 45 0 8 0.396406 20 47 0 8 0.494838 20 48 0 8 0.387846 20 49 0 8 0.483899 20 50 0 8 0.463476 20 57 0 8 0.341294 20 58 0 8 0.449505 20 59 0 8 0.547202 21 30 0 8 0.379382 21 32 0 8 0.468972 21 33 0 8 0.405454 21 35 0 8 0.516999 21 37 0 8 0.317351 21 38 0 8 0.329626 21 39 0 8 0.366883 21 49 0 8 0.31767 22 32 0 8 0.362003 22 35 0 8 0.425143 23 32 0 8 0.53789 23 33 0 8 0.435109 23 35 0 8 0.585533 23 38 0 8 0.342877 23 39 0 8 0.414739 23 47 0 8 0.375239 23 49 0 8 0.363416 23 50 0 8 0.341179 23 58 0 8 0.354824 23 59 0 8 0.416573 24 33 0 8 0.321212 24 35 0 8 0.449081 25 35 0 8 0.456706 26 35 0 8 0.663875 26 36 0 8 0.330316 26 37 0 8 0.371406 26 38 0 8 0.414204 26 39 0 8 0.483356 26 41 0 8 0.320526 26 45 0 8 0.36826 26 47 0 8 0.421013 26 48 0 8 0.311254 26 49 0 8 0.417045 26 50 0 8 0.396898 26 58 0 8 0.36292 26 59 0 8 0.40394 27 37 0 8 0.35172 27 38 0 8 0.370686 27 39 0 8 0.417003 27 45 0 8 0.334262 27 47 0 8 0.344327 27 49 0 8 0.359204 27 50 0 8 0.309054 28 37 0 8 0.348087 28 38 0 8 0.384926 28 39 0 8 0.440823 28 45 0 8 0.330616 28 47 0 8 0.374686 28 49 0 8 0.381069 28 50 0 8 0.35294 28 58 0 8 0.329213 28 59 0 8 0.353021 29 38 0 8 0.461583 29 39 0 8 0.521643 29 41 0 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0 8 0.396413 33 52 0 8 0.338361 33 53 0 8 0.436528 33 54 0 8 0.413407 33 55 0 8 0.421128 33 56 0 8 0.366536 33 57 0 8 0.370448 33 58 0 8 0.435972 33 59 0 8 0.510581 34 45 0 8 0.377413 34 46 0 8 0.427271 34 47 0 8 0.436513 34 48 0 8 0.444676 34 49 0 8 0.479966 34 50 0 8 0.475159 34 51 0 8 0.310689 34 53 0 8 0.350981 34 54 0 8 0.317925 34 55 0 8 0.341086 34 59 0 8 0.319254 35 44 0 8 0.355155 35 45 0 8 0.49209 35 46 0 8 0.586402 35 47 0 8 0.673856 35 48 0 8 0.652542 35 49 0 8 0.707889 35 50 0 8 0.722434 35 51 0 8 0.495153 35 52 0 8 0.426416 35 53 0 8 0.571733 35 54 0 8 0.510752 35 55 0 8 0.486542 35 56 0 8 0.391399 35 57 0 8 0.380017 35 58 0 8 0.555604 35 59 0 8 0.711709 36 45 0 8 0.495601 36 46 0 8 0.604809 36 47 0 8 0.595807 36 48 0 8 0.633738 36 49 0 8 0.637672 36 50 0 8 0.664142 36 51 0 8 0.546551 36 52 0 8 0.455294 36 53 0 8 0.49438 36 54 0 8 0.471074 36 55 0 8 0.454763 36 56 0 8 0.389241 36 57 0 8 0.399629 36 58 0 8 0.446647 36 59 0 8 0.485988 37 46 0 8 0.677224 37 47 0 8 0.630072 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