PFRMAT RR TARGET T0484 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MRDMTEETRKDLPPEALRALAEAEERRRRAKALDLPKEIGGRNGPEPVRF GDWEKKGIAIDF 4 13 0 8 0.0266435 4 14 0 8 0.037412 4 15 0 8 0.0479473 4 16 0 8 0.0659513 4 17 0 8 0.0331901 4 18 0 8 0.0241637 4 19 0 8 0.0322996 4 20 0 8 0.0353842 4 21 0 8 0.0143313 4 22 0 8 0.0076399 4 23 0 8 0.025693 4 24 0 8 0.0113992 4 25 0 8 0.0165243 4 26 0 8 0.0215593 4 27 0 8 0.0147293 4 28 0 8 0.0194182 4 29 0 8 0.0136164 4 30 0 8 0.0219657 4 31 0 8 0.0139482 4 32 0 8 0.0428171 4 33 0 8 0.0295149 4 34 0 8 0.0228749 4 35 0 8 0.0447525 4 36 0 8 0.0558543 4 37 0 8 0.0348035 4 38 0 8 0.0340253 4 39 0 8 0.0758188 4 40 0 8 0.0302117 4 41 0 8 0.0274034 4 42 0 8 0.0308687 4 45 0 8 0.0397005 4 46 0 8 0.0377664 4 47 0 8 0.0625714 4 48 0 8 0.0662663 4 49 0 8 0.0470693 4 50 0 8 0.0825229 4 51 0 8 0.0383466 4 52 0 8 0.0287656 4 53 0 8 0.0332743 4 54 0 8 0.0166473 4 55 0 8 0.0302841 4 56 0 8 0.0506963 4 57 0 8 0.0440587 4 58 0 8 0.037891 4 59 0 8 0.0742242 5 14 0 8 0.0330178 5 15 0 8 0.0246382 5 16 0 8 0.0439766 5 17 0 8 0.0298371 5 18 0 8 0.0189132 5 19 0 8 0.0218903 5 20 0 8 0.0214625 5 23 0 8 0.0232122 5 26 0 8 0.0217526 5 28 0 8 0.017317 5 29 0 8 0.0140083 5 30 0 8 0.0180999 5 32 0 8 0.0259947 5 33 0 8 0.024913 5 35 0 8 0.0402263 5 37 0 8 0.0386055 5 38 0 8 0.0494293 5 39 0 8 0.050648 5 40 0 8 0.0366468 5 41 0 8 0.0339401 5 46 0 8 0.0560536 5 47 0 8 0.0652768 5 48 0 8 0.0621524 5 49 0 8 0.0603648 5 50 0 8 0.0670693 5 51 0 8 0.0416655 6 15 0 8 0.0187943 6 16 0 8 0.0395163 6 35 0 8 0.0380325 6 38 0 8 0.0485196 6 49 0 8 0.0739769 7 16 0 8 0.0473675 7 17 0 8 0.0275301 7 19 0 8 0.0162136 7 20 0 8 0.0232563 7 23 0 8 0.0256262 7 32 0 8 0.0250041 7 33 0 8 0.0232648 7 35 0 8 0.0509064 7 37 0 8 0.0362071 7 38 0 8 0.0401319 7 39 0 8 0.0668353 7 47 0 8 0.0660419 7 48 0 8 0.0568541 7 49 0 8 0.0606165 7 50 0 8 0.0703167 8 17 0 8 0.0196153 8 18 0 8 0.0109482 8 19 0 8 0.0127101 8 20 0 8 0.0149372 8 23 0 8 0.013626 8 26 0 8 0.0145831 8 30 0 8 0.015975 8 32 0 8 0.0222578 8 33 0 8 0.0181167 8 34 0 8 0.0155063 8 35 0 8 0.0296233 8 36 0 8 0.0338604 8 37 0 8 0.0269395 8 38 0 8 0.0373969 8 39 0 8 0.0480043 8 40 0 8 0.0210838 8 41 0 8 0.0260963 8 42 0 8 0.0286123 8 45 0 8 0.0383508 8 46 0 8 0.0387541 8 47 0 8 0.0609185 8 48 0 8 0.0504975 8 49 0 8 0.0531561 8 50 0 8 0.0564367 8 51 0 8 0.030801 8 52 0 8 0.0288903 8 53 0 8 0.019275 8 54 0 8 0.0167478 8 55 0 8 0.0292263 8 56 0 8 0.0433035 8 59 0 8 0.0415743 9 18 0 8 0.0224131 9 19 0 8 0.027933 9 20 0 8 0.0308831 9 21 0 8 0.0170934 9 22 0 8 0.010113 9 23 0 8 0.0339001 9 24 0 8 0.00990772 9 25 0 8 0.0127667 9 26 0 8 0.0315162 9 27 0 8 0.0159679 9 28 0 8 0.0157547 9 29 0 8 0.0182789 9 30 0 8 0.0227432 9 31 0 8 0.0192349 9 32 0 8 0.0452206 9 33 0 8 0.0382838 9 34 0 8 0.0270687 9 35 0 8 0.0546095 9 36 0 8 0.051886 9 37 0 8 0.0390488 9 38 0 8 0.0447553 9 39 0 8 0.0789364 9 40 0 8 0.0304776 9 41 0 8 0.0302138 9 42 0 8 0.0341675 9 45 0 8 0.0525433 9 46 0 8 0.0506178 9 47 0 8 0.0731661 9 48 0 8 0.0898436 9 49 0 8 0.0575376 9 50 0 8 0.0875186 9 51 0 8 0.0413109 9 52 0 8 0.0337241 9 53 0 8 0.0304981 9 54 0 8 0.0225197 9 55 0 8 0.0326776 9 56 0 8 0.0597986 9 57 0 8 0.0499649 9 58 0 8 0.0444495 9 59 0 8 0.0815157 10 19 0 8 0.00982632 10 20 0 8 0.00914119 10 30 0 8 0.00905693 10 32 0 8 0.0139101 10 33 0 8 0.0109217 10 35 0 8 0.0229988 10 37 0 8 0.0255086 10 38 0 8 0.0332264 10 39 0 8 0.0348723 10 40 0 8 0.0149928 10 41 0 8 0.0206147 10 48 0 8 0.0323558 10 49 0 8 0.0568447 10 50 0 8 0.0487079 11 35 0 8 0.0446036 11 37 0 8 0.0360754 11 38 0 8 0.0449521 11 39 0 8 0.0427849 11 41 0 8 0.0330599 11 46 0 8 0.0483498 11 47 0 8 0.0555857 11 48 0 8 0.0590992 11 49 0 8 0.0682399 11 50 0 8 0.0595402 12 21 0 8 0.0200583 12 22 0 8 0.019632 12 23 0 8 0.0972484 12 25 0 8 0.0239874 12 26 0 8 0.0970336 12 27 0 8 0.0431135 12 28 0 8 0.0273888 12 29 0 8 0.0173979 12 30 0 8 0.0312919 12 32 0 8 0.0486598 12 33 0 8 0.0326876 12 35 0 8 0.067286 12 36 0 8 0.0861399 12 37 0 8 0.0423466 12 38 0 8 0.0584487 12 39 0 8 0.104616 12 41 0 8 0.0395482 12 45 0 8 0.0520229 12 46 0 8 0.0502829 12 47 0 8 0.0952501 12 48 0 8 0.0914305 12 49 0 8 0.0653045 12 50 0 8 0.113171 12 51 0 8 0.0514433 12 53 0 8 0.0510194 12 54 0 8 0.0233885 12 55 0 8 0.0331055 12 58 0 8 0.0653139 12 59 0 8 0.17392 13 32 0 8 0.0254705 13 33 0 8 0.0243073 13 35 0 8 0.0326315 13 37 0 8 0.0390045 13 38 0 8 0.0419856 13 39 0 8 0.0555538 13 40 0 8 0.0247228 13 41 0 8 0.0266184 13 47 0 8 0.070683 13 48 0 8 0.0497062 13 49 0 8 0.0601836 13 50 0 8 0.065744 13 51 0 8 0.0299963 14 23 0 8 0.0136229 14 26 0 8 0.0220315 14 28 0 8 0.00876291 14 30 0 8 0.00904701 14 32 0 8 0.0160553 14 33 0 8 0.0147804 14 35 0 8 0.022763 14 37 0 8 0.0168965 14 38 0 8 0.0248466 14 39 0 8 0.0355887 14 41 0 8 0.015274 14 45 0 8 0.0294171 14 47 0 8 0.0530021 14 48 0 8 0.0340253 14 49 0 8 0.0351047 14 50 0 8 0.0459753 14 58 0 8 0.0245504 15 35 0 8 0.0342974 15 37 0 8 0.0263838 15 38 0 8 0.0282917 15 39 0 8 0.0655432 15 45 0 8 0.0473451 15 46 0 8 0.0274388 15 47 0 8 0.0640884 15 48 0 8 0.0423956 15 49 0 8 0.0470353 15 50 0 8 0.0783029 16 25 0 8 0.0287258 16 26 0 8 0.0841801 16 27 0 8 0.0441593 16 28 0 8 0.0333902 16 29 0 8 0.0270278 16 30 0 8 0.0401008 16 32 0 8 0.0629041 16 33 0 8 0.0575471 16 35 0 8 0.116119 16 36 0 8 0.146351 16 37 0 8 0.0614416 16 38 0 8 0.0486733 16 39 0 8 0.0971436 16 40 0 8 0.0283403 16 41 0 8 0.0380264 16 42 0 8 0.0887652 16 45 0 8 0.0583126 16 46 0 8 0.0451597 16 47 0 8 0.110406 16 48 0 8 0.0754226 16 49 0 8 0.0637966 16 50 0 8 0.0980211 16 51 0 8 0.0442457 16 52 0 8 0.0323466 16 53 0 8 0.0346593 16 54 0 8 0.0503099 16 55 0 8 0.0408526 16 56 0 8 0.0562399 16 57 0 8 0.0609038 16 58 0 8 0.0966923 16 59 0 8 0.174957 17 26 0 8 0.0207582 17 27 0 8 0.0133104 17 28 0 8 0.0146431 17 29 0 8 0.0113431 17 30 0 8 0.0166402 17 32 0 8 0.0208692 17 33 0 8 0.0248619 17 34 0 8 0.0156804 17 35 0 8 0.0352134 17 36 0 8 0.0345178 17 37 0 8 0.0236736 17 38 0 8 0.0305644 17 39 0 8 0.0610497 17 40 0 8 0.0140711 17 41 0 8 0.0178354 17 45 0 8 0.0367763 17 46 0 8 0.031283 17 47 0 8 0.0671008 17 48 0 8 0.0388804 17 49 0 8 0.0454416 17 50 0 8 0.0594159 17 51 0 8 0.0214993 17 55 0 8 0.0241613 17 56 0 8 0.0373447 17 57 0 8 0.028104 17 58 0 8 0.0360442 17 59 0 8 0.057506 18 32 0 8 0.0255511 18 33 0 8 0.0247016 18 35 0 8 0.0322647 18 37 0 8 0.0257954 18 38 0 8 0.0215862 18 39 0 8 0.0335986 18 41 0 8 0.0135681 18 45 0 8 0.0232168 18 47 0 8 0.0535968 18 48 0 8 0.0276172 18 49 0 8 0.0348538 18 50 0 8 0.0402692 18 58 0 8 0.0528816 19 28 0 8 0.027674 19 29 0 8 0.018227 19 30 0 8 0.0330966 19 32 0 8 0.0471475 19 33 0 8 0.0355914 19 35 0 8 0.0664822 19 37 0 8 0.0301085 19 38 0 8 0.04173 19 39 0 8 0.06896 19 41 0 8 0.0281292 19 45 0 8 0.0420261 19 47 0 8 0.0930487 19 48 0 8 0.0523892 19 49 0 8 0.0511073 19 50 0 8 0.0678006 19 58 0 8 0.0789946 19 59 0 8 0.191878 20 29 0 8 0.02 20 30 0 8 0.0336352 20 31 0 8 0.0152586 20 32 0 8 0.0537752 20 33 0 8 0.0459068 20 34 0 8 0.0241794 20 35 0 8 0.0828385 20 36 0 8 0.0995761 20 37 0 8 0.0405546 20 38 0 8 0.0433813 20 39 0 8 0.0813635 20 41 0 8 0.0248893 20 45 0 8 0.0474774 20 47 0 8 0.0912604 20 48 0 8 0.0757421 20 49 0 8 0.0510529 20 50 0 8 0.0787421 20 57 0 8 0.0413348 20 58 0 8 0.133307 20 59 0 8 0.364934 21 30 0 8 0.00916759 21 32 0 8 0.0197462 21 33 0 8 0.0154996 21 35 0 8 0.028338 21 37 0 8 0.013754 21 38 0 8 0.0182282 21 39 0 8 0.0311048 21 49 0 8 0.027485 22 32 0 8 0.0116315 22 35 0 8 0.0301418 23 32 0 8 0.0367843 23 33 0 8 0.0397855 23 35 0 8 0.0606876 23 38 0 8 0.0346925 23 39 0 8 0.0675592 23 47 0 8 0.0917129 23 49 0 8 0.0534353 23 50 0 8 0.0793053 23 58 0 8 0.0779791 23 59 0 8 0.237824 24 33 0 8 0.0116879 24 35 0 8 0.0212541 25 35 0 8 0.0209455 26 35 0 8 0.0484749 26 36 0 8 0.0588382 26 37 0 8 0.031762 26 38 0 8 0.0316628 26 39 0 8 0.0433615 26 41 0 8 0.0194985 26 45 0 8 0.036169 26 47 0 8 0.0733772 26 48 0 8 0.0629235 26 49 0 8 0.0493844 26 50 0 8 0.0610537 26 58 0 8 0.0733219 26 59 0 8 0.165356 27 37 0 8 0.0259983 27 38 0 8 0.0187882 27 39 0 8 0.029817 27 45 0 8 0.0249639 27 47 0 8 0.0539325 27 49 0 8 0.0363835 27 50 0 8 0.036081 28 37 0 8 0.0202471 28 38 0 8 0.0166192 28 39 0 8 0.0366389 28 45 0 8 0.0244614 28 47 0 8 0.0575243 28 49 0 8 0.0319952 28 50 0 8 0.0488882 28 58 0 8 0.0329528 28 59 0 8 0.119842 29 38 0 8 0.0206847 29 39 0 8 0.0399166 29 41 0 8 0.0141288 29 45 0 8 0.0341683 29 47 0 8 0.0600589 29 48 0 8 0.0523678 29 49 0 8 0.0399214 29 50 0 8 0.0498217 29 57 0 8 0.0228702 29 58 0 8 0.0299698 29 59 0 8 0.070332 30 39 0 8 0.0510062 30 40 0 8 0.0134131 30 41 0 8 0.0172356 30 42 0 8 0.0306205 30 45 0 8 0.0465222 30 46 0 8 0.0350237 30 47 0 8 0.0770399 30 48 0 8 0.0521445 30 49 0 8 0.0512682 30 50 0 8 0.0778011 30 55 0 8 0.0322513 30 57 0 8 0.0351122 30 58 0 8 0.0538992 30 59 0 8 0.0746974 31 41 0 8 0.0137094 31 45 0 8 0.0350632 31 47 0 8 0.0621019 31 49 0 8 0.0467576 31 50 0 8 0.0402895 32 41 0 8 0.0313766 32 42 0 8 0.0508593 32 45 0 8 0.083325 32 46 0 8 0.0702308 32 47 0 8 0.101485 32 48 0 8 0.0801957 32 49 0 8 0.076384 32 50 0 8 0.0731076 32 51 0 8 0.0360937 32 53 0 8 0.0270056 32 54 0 8 0.0298409 32 55 0 8 0.0504554 32 56 0 8 0.0617648 32 57 0 8 0.0612025 32 58 0 8 0.0957882 32 59 0 8 0.115675 33 42 0 8 0.0431232 33 43 0 8 0.0301022 33 44 0 8 0.023468 33 45 0 8 0.0678185 33 46 0 8 0.0440768 33 47 0 8 0.0776922 33 48 0 8 0.0558664 33 49 0 8 0.0663825 33 50 0 8 0.0592582 33 51 0 8 0.02368 33 52 0 8 0.0273096 33 53 0 8 0.0171684 33 54 0 8 0.0312654 33 55 0 8 0.0334125 33 56 0 8 0.0505094 33 57 0 8 0.0383507 33 58 0 8 0.0524962 33 59 0 8 0.0612003 34 45 0 8 0.0302684 34 46 0 8 0.0409451 34 47 0 8 0.0894775 34 48 0 8 0.0493273 34 49 0 8 0.0787037 34 50 0 8 0.0567808 34 51 0 8 0.0217894 34 53 0 8 0.0169189 34 54 0 8 0.0291227 34 55 0 8 0.0285608 34 59 0 8 0.0607579 35 44 0 8 0.0293912 35 45 0 8 0.0657482 35 46 0 8 0.0670156 35 47 0 8 0.0926668 35 48 0 8 0.0869085 35 49 0 8 0.0775018 35 50 0 8 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44 56 0 8 0.0385321 45 54 0 8 0.0348294 45 55 0 8 0.0361 45 56 0 8 0.0433479 45 57 0 8 0.0391586 45 58 0 8 0.0415268 45 59 0 8 0.0791366 46 55 0 8 0.0431189 46 56 0 8 0.0613676 46 57 0 8 0.0493484 46 58 0 8 0.0473617 46 59 0 8 0.0873771 47 56 0 8 0.117432 47 57 0 8 0.184543 47 58 0 8 0.131407 47 59 0 8 0.183647 48 57 0 8 0.149486 48 58 0 8 0.162242 48 59 0 8 0.383905 49 58 0 8 0.0934428 49 59 0 8 0.255407 50 59 0 8 0.437271 END