# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1shsA 116 3.746e-01 1shsA b.15.1.1 23675 1q6hA 211 1.320e+00 d.26.1.1 95975 1r9hA 119 1.584e+00 d.26.1.1 97260 1gmeA 151 2.477e+00 b.15.1.1 65305 1wpkA 147 4.244e+00 1dcoA 100 4.288e+00 1dcpA d.74.1.1 39680 2fdbM 150 6.069e+00 1hxvA 86 6.157e+00 d.26.1.1 71089 1i0dA 332 6.483e+00 1pscA c.1.9.3 61487 1eywA 331 6.510e+00 1pscA c.1.9.3 29057 1pscA 330 7.589e+00 1pscA c.1.9.3 29058 1ru0A 101 9.255e+00 d.74.1.1 111937 2ebbA 97 9.415e+00 1jvwA 161 9.922e+00 d.26.1.1 71907 1a0dA 438 1.014e+01 1a0cA c.1.15.3 29533 1usmA 78 1.159e+01 d.74.1.1 99876 1bfgA 127 1.163e+01 b.42.1.1 25485 1pu1A 92 1.173e+01 d.266.1.1 104307 1bkf 108 1.185e+01 1fkj 2vc7A 314 1.261e+01 2p39A 143 1.416e+01 2hxpA 145 1.478e+01 1pwaA 124 1.508e+01 b.42.1.1 95211 1bl0A 117 1.695e+01 1d5yA a.4.1.8 16053 a.4.1.8 16054 3cjyA 254 1.698e+01 1d5yA 289 1.734e+01 1d5yA a.4.1.8 16055 a.4.1.8 16056 d.60.1.2 39532 2cs7A 56 1.854e+01 d.9.2.1 130748 2ab3A 30 1.914e+01 2idaA 103 1.921e+01 2a5yA 174 2.020e+01 f.1.4.1 126183 1y03A 36 2.045e+01 1bkfA 108 2.082e+01 d.26.1.1 38382 1ks9A 292 2.118e+01 a.100.1.7 68857 c.2.1.6 68858 1h7zA 192 2.165e+01 1qhvA b.21.1.1 60733 2hinA 67 2.280e+01 2hewF 129 2.296e+01 b.22.1.1 136364 1v86A 96 2.330e+01 d.15.1.1 108421 2d2jA 330 2.341e+01 c.1.9.3 131175 1fd9A 205 2.367e+01 1fd9A d.26.1.1 59771 1yybA 27 2.421e+01 j.121.1.1 124211 1zjjA 262 2.423e+01 1hstA 75 2.466e+01 1hstA a.4.5.13 16140 2f06A 145 2.514e+01 d.58.18.11 132652 d.58.18.11 132653 1ijtA 129 2.684e+01 1bfg b.42.1.1 62510 2ca9A 133 2.811e+01 1wwpA 120 2.879e+01 2obdA 473 2.959e+01 1jj2P 96 2.995e+01 1ffkN b.34.5.1 63101 2dprA 22 3.074e+01 1ffkN 96 3.077e+01 1ffkN b.34.5.1 24606 1u79A 126 3.331e+01 d.26.1.1 107714 1rieA 128 3.367e+01 b.33.1.1 24427 2oq8A 151 3.457e+01 1zzwA 148 3.488e+01 2ppnA 108 3.520e+01 1ontA 22 3.579e+01 j.31.1.2 46232 2a50A 65 3.612e+01 1r94A 98 3.631e+01 b.124.1.1 97251 2nvgA 142 3.649e+01 2fp7A 41 3.683e+01 1rfsA 128 3.735e+01 b.33.1.1 24434 1udzA 180 3.848e+01 b.51.1.1 99239 1nwbA 102 3.976e+01 b.124.1.1 86296