# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2iw2A 494 1.12e+00 2aexA 346 1.88e+00 1ihjA 98 2.24e+00 1pdr b.36.1.1 62382 1itwA 741 2.28e+00 c.77.1.2 76793 1lwdA 413 2.59e+00 c.77.1.1 78265 1rr7A 129 2.94e+00 a.4.1.14 105075 2yweA 600 3.47e+00 1h6rA 236 4.65e+00 d.22.1.1 65683 1i88A 389 4.86e+00 c.95.1.2 66070 c.95.1.2 66071 2g7oA 70 6.54e+00 a.241.1.1 134736 1a78A 134 6.63e+00 1c1lA b.29.1.3 24212 2p3yA 491 6.90e+00 1zowA 313 6.99e+00 1b59A 370 7.77e+00 1bn5 a.4.5.25 16225 d.127.1.1 41162 1bi5A 389 7.81e+00 1bi5A c.95.1.2 35985 c.95.1.2 35986 1h2kA 349 8.16e+00 b.82.2.6 76572 2hzqA 174 8.87e+00 1bn5 478 8.94e+00 1bn5 1b6a 478 8.98e+00 1bn5 1b6aA 478 8.98e+00 a.4.5.25 16223 d.127.1.1 41160 1ic1A 190 9.90e+00 1zxq b.1.1.3 21654 b.1.1.4 21690 2c9aA 259 9.92e+00 b.1.1.4 130129 b.29.1.25 130130 1y8qA 346 1.00e+01 2b5gA 171 1.11e+01 d.108.1.1 127892 1o60A 292 1.14e+01 c.1.10.4 92532 2cwsA 237 1.19e+01 2j7mA 149 1.19e+01 1pujA 282 1.44e+01 c.37.1.8 88294 2d51A 406 1.45e+01 1a99A 344 1.45e+01 1pot c.94.1.1 35812 1qqsA 174 1.49e+01 1nglA b.60.1.1 27143 1vdnA 162 1.67e+01 b.62.1.1 120006 2qcxA 263 1.72e+01 1mhyB 395 1.73e+01 1mtyB a.25.1.2 16781 2yrrA 353 1.74e+01 1n4wA 504 1.78e+01 c.3.1.2 91676 d.16.1.1 91677 1i86A 389 1.81e+01 c.95.1.2 66068 c.95.1.2 66069 1r31A 428 1.82e+01 d.58.20.1 96897 d.179.1.1 96898 1q1cA 280 1.82e+01 d.26.1.1 104474 d.26.1.1 104475 2o4uX 334 1.85e+01 1h6hA 143 1.89e+01 d.189.1.1 65681 2o99A 182 1.93e+01 d.110.2.2 138952 3bhdA 234 1.93e+01 1mq8A 291 1.94e+01 b.1.1.3 79405 b.1.1.4 79406 1mykA 53 1.96e+01 1bazA a.43.1.1 17425 1l4aE 79 2.00e+01 h.1.15.1 73563 2p1jA 186 2.01e+01 2ccmA 191 2.04e+01 1qu6A 179 2.10e+01 1qu6A d.50.1.1 38784 d.50.1.1 38785 1oi1A 221 2.15e+01 b.34.9.3 87037 b.34.9.3 87038 1ts3A 194 2.15e+01 1aw7A b.40.2.2 25168 d.15.6.1 37757 2iyaA 424 2.16e+01 2j1aA 150 2.17e+01 2bivA 243 2.20e+01 b.34.9.3 128592 b.34.9.3 128593 3bt5A 177 2.21e+01 3tssA 194 2.21e+01 b.40.2.2 25160 d.15.6.1 37749 2z6wA 165 2.23e+01 1zj8A 566 2.28e+01 2hngA 127 2.30e+01 2bitX 165 2.31e+01 b.62.1.1 128590 1zcbA 362 2.34e+01 a.66.1.1 124901 c.37.1.8 124902 2j01T 146 2.36e+01 1x47A 98 2.40e+01 d.50.1.1 121680 1b3bA 415 2.41e+01 1hwyA c.2.1.7 30244 c.58.1.1 33892 1iamA 185 2.44e+01 b.1.1.3 21653 b.1.1.4 21689 1hzpA 335 2.45e+01 1hn9A c.95.1.2 61455 c.95.1.2 61456 1b9cA 236 2.46e+01 1ema d.22.1.1 38358 1ciy 590 2.48e+01 1ciy 1ciyA 590 2.48e+01 b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 2nqlA 388 2.48e+01 2ibaA 302 2.54e+01 d.96.1.4 137178 d.96.1.4 137179 1ymmE 249 2.56e+01 b.1.1.1 123705 b.1.1.2 123706 1ema 236 2.56e+01 1ema 2qgnA 322 2.64e+01 2eb1A 200 2.71e+01 1gt91 357 2.72e+01 1t1iA 364 2.73e+01 c.41.1.2 106248 1wrrA 301 2.74e+01 d.96.1.4 121204 d.96.1.4 121205 1r4uA 301 2.75e+01 d.96.1.4 97047 d.96.1.4 97048 1tyhA 248 2.77e+01 a.132.1.3 107458 1i06A 180 2.78e+01 1mup b.60.1.1 27131 2ghtA 181 2.79e+01 1t1gA 364 2.80e+01 c.41.1.2 106246 1mylA 53 2.82e+01 1bazA a.43.1.1 17427 1aj5A 173 2.84e+01 1alvA a.39.1.8 17367 1zboA 210 2.87e+01 b.122.1.10 124859 3c4bA 265 2.90e+01 1b4vA 504 2.94e+01 1b8sA c.3.1.2 30334 d.16.1.1 37865 2bhwA 232 2.98e+01 1v9nA 360 3.08e+01 2bvpA 276 3.13e+01 b.1.1.2 129291 d.19.1.1 129292 1aw7A 194 3.14e+01 1aw7A b.40.2.2 25164 d.15.6.1 37753 1q48A 134 3.20e+01 d.224.1.2 95783 2pifA 276 3.25e+01 1yakA 263 3.27e+01 a.132.1.3 122833 1h8dH 260 3.34e+01 5ptp 1ijhA 504 3.35e+01 c.3.1.2 66161 d.16.1.1 66162 1a64A 97 3.45e+01 1cdcA b.1.1.1 19750 1zvkA 358 3.46e+01 1ucyE 109 3.47e+01 1ucyE 1vclA 432 3.47e+01 b.42.2.1 108498 b.42.2.1 108499 d.281.1.1 108500 1qa9A 102 3.49e+01 1qa9A b.1.1.1 19742 1mgtA 174 3.51e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 2il5A 171 3.52e+01 1n4kA 381 3.53e+01 a.118.22.1 79992 b.42.6.1 79993 2i9dA 217 3.56e+01 2awkA 228 3.62e+01 1a6pA 94 3.64e+01 1cdcA b.1.1.1 19748 2ch5A 347 3.65e+01 c.55.1.5 130453 c.55.1.5 130454 1srqA 341 3.68e+01 e.55.1.1 105967 1oz9A 150 3.73e+01 d.92.1.15 93808 2nyiA 195 3.81e+01 1mzeA 351 3.85e+01 b.82.2.6 79694 1xgsA 295 3.86e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1r30A 369 3.90e+01 c.1.28.1 96895 1b8sA 504 3.94e+01 1b8sA c.3.1.2 30335 d.16.1.1 37866 1u6eA 335 3.99e+01 c.95.1.2 119568 c.95.1.2 119569 1odoA 408 3.99e+01 a.104.1.1 92783