(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0482 PaT3, Pseudomonas aeruginosa, 120 residues
              10               20        30        40        50        
              |                |         |         |         |        
   1 MFEPGHLHLVS.LP.GLD.Q....QDINIHIRYEVRQNAESGAYVHFDMDGEIDGKPFSDSFELP
   2 MFEPGHLHRSN.PP.GLGgQ....PAYSIDFYYEVRKDSPEGPMLHGRLVGEIDGKAFEEVFEMH
   3 MFEPGHLHLVS.LP.GLD.Q....QDINIHIRYEVRHNAESGAYVHFDMDGEIDGKPFSDSFELP
   4 MFEPGHLNRKK.QP.GIP.Gv...PDFDIDVYYDVRHDPKEGVLLHFRMTGQVNGRSFTDEFEMH
   5 MFEPGHLHLVS.LP.GLD.Q....QDINIHIRYEVRQNAESGAYVHFDMDGEIDGKPFSDSFELP
   6 MFEPGHLHLVS.LP.GLD.Q....QDINIHIRYEVRQNAESGAYVHFDMDGEIDGKPFSDSFELP
   7 MFIPGHLHLAS.AS.EVD.R....QAFDIHLRYRVLEAEARPVAVHFDMEGRIDGQPFSESFELP
   8 MFIPGHLHLAS.AS.EVD.R....QAFDIHLRYRVLEAEARPVAVHFDMEGRIDGQPFSESFELP
   9 MFTPGHAHREQkVD.KLN.R....QAFICDVYYEVREDAREGAMLHMRMEGEIDGRPFAEECELH
  10 MFVPGHLHLAS.AS.EVD.R....QAFDIHLRYRILEADARPVAVHFDMEGRIDGQPFRDSFELP
  11 MYEPGHLHLTH.VAlQPS.D....ISYDIHLRYNVEEDPKQGTSMHFTMQGEINGKPFEEQFQLP
  12 MYEPGHLHITH.VAlQPS.E....VSYDIHLRYEVNEDPKEGTSMHFTMQGQINDKPFEEQFQLT
  13 QYQPGHVHIER.TAlNTN.D....HSYDLNIEYEAATDPKEGRGIQFRMHGHIEGKTVDEKFFLA
  14 MFGPGHVEISR.LP.TEA.R....PGYHLTLDYHVEGAEPRPEWACFHLRVEAPQVHIDEQFRMH
  15 QFEPGHLHIER.HAlTDD.D....VNYNVHLDYEVFTDPQKGKGIQFTLHGSMQGKEVNEPFFLP
  16 QYHPGHVHIER.TAlNNA.D....HSYDLNIEYEAVSDPREGRGIQFHMHGSIEGKPVEEKFFLP
  17 MFEPGHLHIER.HAlNKD.D....FSYNLCIDYEVAHDPKEGKGMLFTLHGTIEDKSLKEQFFLA
  18 QYQPGHVHIER.TAlNAN.D....HSYDLNIEYEATQDPREGRGIQFRLHGSIEGKPVDEKFYLP
  19 MFTPGHLHRDN.LD.RPE.GlrlaPPFSVDFYYEIRQDPVQGPMLHMRLVGEVSGRHFDEEFELH
  20 QYQPGHVHIER.SAlNNA.D....HSYDLNIEYEAVSDPKEGRGIQFHMHGSIEGKTVEEKFFLA
  21 QYHSGHVHIER.TAlNNA.D....HSYDLNIEYEAVADPKEGRGIQFHMHGSIEGKPVEEKFFLA


      60          70        80        90       100       110       120
      |           |         |         |         |         |         |
   1 RDTAFNFASDA..TRVAQKHGLHPKFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLERIIRHE
   2 RDTAFNFASVI..SRLVAKHGLHPNNSPIMRAHKEYDAIFEDIRAKLHAKPGEAVNLDHVERDG
   3 RDTAFNFASDA..TRVAQKHGLHPKFGAITRVHKEYDAMFEDIRDKLHAHPGEPVDLERIIRH-
   4 RDTAFNFASRI..AKAAVKQGLPVNASPIMRSHSEYDAMFADIRRKLEIRTGEPVNFDNLEKDG
   5 RDTAFNFASDA..TRVAQKHGLHPKFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLERIIRH-
   6 RDTAFNFASDA..TRVAQKHGLHPKFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLERIIRH-
   7 RDAAVHFASRA..SRLARRHGLRLRQGPIVRQRREYDAMFDDLRRRLKLKSGEAIDLDRYLRG-
   8 RDAAVHFASRA..SRLARRHGLRLRQGPIVRQRREYDAMFDDLRRRLKLKSGEAIDLDRYLRG-
   9 RDMAFDFLNAL..TRIAVRNGLHPRFGPVLREHGEYDAMFRDIRDKLGLRPGDPVDLGHL----
  10 RDAAVHFASRA..SRVARRHGLRLRQGPIVRQRREYDAMFDDLRRRLKLKAGEAIDLDRH----
  11 RDLAFNFAHDA..SRIAIRHGLPNSAALPIAQHKDYDRMFADIRDKLHAKSGDPVKPEH-----
  12 RDLAFNFAHDA..SRIAIRHGLPNSASLPIAQHKDYDRIFADIRDKLHAKPGDPVKPEH-----
  13 KDQVLPSFLMQlsRKAQSYLPPPKKFENLGSPHKLYDYMFEDIRTKLDVKSGDPIKPEH-----
  14 RDVAYNFLQRI..RRCLRDHGVQVRQDILFGFHALYDPLYADLRQQLHLQPGEAVDLDRFLREG
  15 KEEAYNFARNV..TQIAEKYGIPKSHSQIGSVHKHYDLMFEDIRMKLNMKSGDPVNPEH-----
  16 KDQVLPSFLMLltRKAQSYLAPPKKFETLSSPHKLYDYMFADIREKLDVKSGDPIKPEH-----
  17 KDLAFDFARHA..TRLAQQHGLPKSAS-IASMHKYYDEMFEDVRKQLDVKPGDPVKPEH-----
  18 KDQVLPSFLMVlsRKAQSHLPPHKKFETLGSPHKIYDQMFEDIRAKLDVKSGDSIKPEH-----
  19 RDVAFNFASVA..SRVAARHGLPPNASPVMRGHDEYDKVFADIRSKLHARPGEPVNLDH-----
  20 KDQALPSFLMLltRKAQSYLAPPKKFETLSSPHKLYDHMFADIREKLEVKSGDPIKPEH-----
  21 KDQVLPSFLMLltRKAQSYLAPPKKFETLSSPHKLYDHMFADIREKLDVKSGDPIKPEH-----