# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mzjA	339	15.29	c.95.1.2,c.95.1.2	79700,79701
2c2jA	211	20.62		
2glwA	92	22.82		
2z90A	161	26.08		
2ebdA	309	27.93		
1u0mA	382	34.41	c.95.1.2,c.95.1.2	107557,107558
1tedA	393	44.26	c.95.1.2	106807
2bbeA	108	47.89		
2biiA	424	49.92		
1snlA	103	51.32	a.39.1.7	105820
1hxvA	113	52.68	d.26.1.1	71089
2a7bA	120	54.88	b.1.10.2	126333
1v77A	212	58.71	c.6.3.2	108402
2cr9A	139	61.95	d.297.1.1	130735
2c2uA	207	63.25		
2c41A	158	70.67		
1dwkA	156	70.98	a.35.1.4,d.72.1.1	17075,39606
1hnjA	317	75.64	c.95.1.2,c.95.1.2	35969,35970
1zglB	192	77.44	b.1.1.2,d.19.1.1	125033,125034
1hzpA	335	82.16	c.95.1.2,c.95.1.2	61455,61456
3bs6A	280	83.86		
1o0pA	104	86.14	d.58.7.1	86535