# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mzjA	339	6.732	c.95.1.2,c.95.1.2	79700,79701
1jf0A	195	9.627	a.39.1.5	62926
2glwA	92	13.49		
1wm3A	72	14.66	d.15.1.1	114736
2ebdA	309	15.89		
1hxvA	113	17.38	d.26.1.1	71089
1hzpA	335	21.73	c.95.1.2,c.95.1.2	61455,61456
1tedA	393	26.89	c.95.1.2	106807
2nvaA	372	36.41		
2ib8A	395	41.34		
1mykA	53	43.09	a.43.1.1	17425
1x6mA	196	44.58	b.88.1.4	114920
1xmpA	170	44.98	c.23.8.1	115521
1bdtA	53	45.62	a.43.1.1	17433
1fltX	95	48.37	b.1.1.4	21765
2a7bA	120	48.93	b.1.10.2	126333
1bazA	53	49.37	a.43.1.1	17421
2z90A	161	49.91		
1hnjA	317	50.75	c.95.1.2,c.95.1.2	35969,35970
2hzqA	174	50.79		
2c2jA	211	51.10		
2d9rA	104	51.81	b.129.2.1	131350
1h0cA	392	52.57	c.67.1.3	83424
2oyoA	196	54.15		
1u11A	182	57.79	c.23.8.1	107576
3c1lA	188	58.71		
2oynA	146	59.30		
1fm0D	81	60.29	d.15.3.1	37642
1v77A	212	60.67	c.6.3.2	108402
1mylA	53	63.27	a.43.1.1	17427
1qlgA	355	64.52	b.68.3.1	27627
1n2fA	142	64.74	d.227.1.1	79853
1u6eA	335	65.50	c.95.1.2,c.95.1.2	119568,119569
1euvB	86	66.05	d.15.1.1	37598
2vbuA	136	66.92		
1zowA	313	68.05		
3ccgA	190	68.48		
2cr9A	139	69.37	d.297.1.1	130735
2bgiA	272	72.83		
2zfdB	123	75.55		
2pooA	355	75.93	b.68.3.1	27626
1dwkA	156	77.55	a.35.1.4,d.72.1.1	17075,39606
1wviA	257	78.06	c.108.1.14	114915
2ra6A	166	78.85		
1jysA	242	80.57	c.56.2.1	77216
2a5hA	416	84.35		
1wggA	96	85.64	d.15.1.1	114612
2qdfA	335	86.44