# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mzjA	339	11.05	c.95.1.2,c.95.1.2	79700,79701
2ebdA	309	16.11		
2glwA	92	17.10		
2z90A	161	17.64		
2c41A	158	20.67		
2c2jA	211	24.02		
1hzpA	335	24.56	c.95.1.2,c.95.1.2	61455,61456
2c2uA	207	27.88		
1tedA	393	36.40	c.95.1.2	106807
1w2tA	432	38.98	b.29.1.19,b.67.2.3	120607,120608
2nvaA	372	40.82		
1ji4A	144	43.46	a.25.1.1	77117
1v77A	212	44.26	c.6.3.2	108402
1wdkC	390	45.13	c.95.1.1,c.95.1.1	109258,109259
2biiA	424	45.89		
1r42A	615	58.95	d.92.1.5	96968
1snlA	103	62.58	a.39.1.7	105820
1rhyA	202	62.94	d.14.1.9,d.14.1.9	97491,97492
2a7bA	120	63.91	b.1.10.2	126333
2a5hA	416	65.76		
1u6eA	335	66.11	c.95.1.2,c.95.1.2	119568,119569
1o0pA	104	67.47	d.58.7.1	86535
1hnjA	317	67.61	c.95.1.2,c.95.1.2	35969,35970
2d9rA	104	68.14	b.129.2.1	131350
2p19A	149	73.11		
1qfoA	119	73.80	b.1.1.1	19708
2oynA	146	76.04		
2ib8A	395	78.13		
1zowA	313	78.20		
1u0mA	382	79.29	c.95.1.2,c.95.1.2	107557,107558
1jysA	242	83.21	c.56.2.1	77216
1hxvA	113	83.41	d.26.1.1	71089
1wm3A	72	84.91	d.15.1.1	114736
2bbeA	108	85.05		
1zvpA	133	88.04	d.58.18.9,d.58.18.9	125714,125715
1rxyA	253	88.16	c.56.2.1	98065